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gtaagtaactgaagcatgctttgacgtatgccagaagtgtgcccttctgatacaatttcttaattgtttgattagtcccatggatttcattatgcatagcaacttcttatgttttatttggattgaggaagaaaatcttgatcatttcagGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGCATGAAGCTTGGTCCAGTTGATAATGTCAAG
species | Oryza sativa |
transcript | LOC_Os04g41910.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTACAACTACAGTTATATTGAGGCATATGTTCACTCCTGCTGAATTGCGA GCCGATGAAACTCTTCTTCCEST: gi|29616209|gb|CB621221.1|CB621221
genomic: TTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGAgtaagtaact ... atcatttcagGCCGATGAAACTCTTCTTCC
EST: TTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGA GCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTCAGAGAAGAATGCEST: gi|29636734|gb|CB641743.1|CB641743
genomic: TTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGAgtaagtaact ... atcatttcagGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGC
EST: TTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGA GCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGCEST: gi|27549049|gb|CA766863.2|CA766863
genomic: TTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGAgtaagtaact ... atcatttcagGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGC
EST: TTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGA GCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTCAGAGAAGAATGCEST: gi|29676261|gb|CB672536.1|CB672536
genomic: TTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGAgtaagtaact ... atcatttcagGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGC
EST: TTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGA GCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGC
genomic: TTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGAgtaagtaact ... atcatttcagGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGC
atagcaacttcttatgttttatttggattgaggaagaaaatcttgatcatttcagGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGCATGAAGCTTGGTCCAGTTGATAATGTCAAG
tcttgat putative branch site (score: 4)
tcatttc CT-rich tract
ttcttatgttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaactgaagcatgctttgacgtatgccagaagtgtgcccttctgatacaatttcttaattgtttgattagtcccatggatttcattatgcatagcaacttcttatgttttatttggattgaggaagaaaatcttgatcatttcagGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGCATGAAGCTTGGTCCAGTTGATAATGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC