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...aactctaactctcagagtaaagaacattattttgtgttgtggcagctgatcatacataccgatctttctttcctacctaacattgttgacatctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGGCTCGTGCCTGGTTCAAACTGTTTGCCGCTGGCTCTACCCGAGGCAAAGT
species | Oryza sativa |
transcript | LOC_Os04g40040.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATC GTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGGEST: gi|58604335|gb|CK014863.1|CK014863
genomic: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATCgtaagagcat ... atctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGG
EST: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATC GTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGGEST: gi|29663381|gb|CB659656.1|CB659656
genomic: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATCgtaagagcat ... atctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGG
EST: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATC GTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGGEST: gi|29673127|gb|CB669402.1|CB669402
genomic: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATCgtaagagcat ... atctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGG
EST: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATC GTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGGEST: gi|163927634|gb|EG710474.1|EG710474
genomic: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATCgtaagagcat ... atctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGG
EST: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATC GTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGGEST: gi|58673835|gb|CK062521.1|CK062521
genomic: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATCgtaagagcat ... atctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGG
EST: GGCATTGGATC GTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGGEST: gi|87037871|gb|CI192493.1|CI192493
genomic: GGCATTGGATCgtaagagcat ... atctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGG
EST: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATC GTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGGEST: gi|29675869|gb|CB672144.1|CB672144
genomic: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATCgtaagagcat ... atctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGG
EST: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATC GTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGGEST: gi|29665205|gb|CB661480.1|CB661480
genomic: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATCgtaagagcat ... atctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGG
EST: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATC GTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGGEST: gi|29665204|gb|CB661479.1|CB661479
genomic: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATCgtaagagcat ... atctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGG
EST: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATC GTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGGEST: gi|218489922|gb|FG967500.1|FG967500
genomic: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATCgtaagagcat ... atctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGG
EST: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATC GTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGG
genomic: AGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATCgtaagagcat ... atctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGG
ctgatcatacataccgatctttctttcctacctaacattgttgacatctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGGCTCGTGCCTGGTTCAAACTGTTTGCCGCTGGCTCTACCCGAGGCAAAGT
atacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactctaactctcagagtaaagaacattattttgtgttgtggcagctgatcatacataccgatctttctttcctacctaacattgttgacatctgatcagGTAAGGAACACAAGGGCTGTTAATCGTACTGGGCAGCCAACCGGCTACAGGCTCGTGCCTGGTTCAAACTGTTTGCCGCTGGCTCTACCCGAGGCAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - -aagaaca
- - - - - - - - - - - - - - - - tgtgttg
- - - - - - - - - - - - - - - - - - - - -gcagctg
- - - - - - - - - - - - - - - - - - - - - - - - - catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttga