1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cataattttagttacatgcttaccagattgtagcaatccctgatagttaggcatacttaaagccaaaatgcttactaaaccaatttggaattcatggtagGTTTCTGCAGAAGAACCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGTTCTAAAG
species | Oryza sativa |
transcript | LOC_Os04g01130.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAACCAGAGTTCGTTCNTCCTTTCNGCGTATGATGGGTGEST: gi|157651036|gb|EX450670.1|EX450670
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAACCAGAGTTCGTTCTTCCTTTCTGCGTATGATGG-TG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAACCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAACCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
gttaggcatacttaaagccaaaatgcttactaaaccaatttggaattcatggtagGTTTCTGCAGAAGAACCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGTTCTAAAG
tactaaa putative branch site (score: 4)
atacttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cataattttagttacatgcttaccagattgtagcaatccctgatagttaggcatacttaaagccaaaatgcttactaaaccaatttggaattcatggtagGTTTCTGCAGAAGAACCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGTTCTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - tacatgc
- - - - - - - - tgcttac
- - - - - - - - - - - - - - tgtagca
- - - - - - - - - - - - - - - - - -atccctg
- - - - - - - - - - - - - - - - - - - - - - - - -ggcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccaa