1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatctctcctatggttattttcatttgattgcatggtagttagatgtaatccatgccccttattttgctgcgagacctcatgtatagtttaaacatgcttgctcagttgtaacttaggtgttgttttccattatagGAACCAAACGAATACAATGGATTCGTAACAAAGCTCTGTCAGAAATTTAGGCCGGCTGGTGATAAAATTTTTTTGCAGCTTCTTTCGTCCAAGAAAGCTT
species | Oryza sativa |
transcript | LOC_Os03g63920.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGGCACTGGAGTGCCTTGTTGCTTTACGGAAGGCCTGCATTATTGAACAG GAACCAAACGAATACAATGGATTCGTAACAAAGCTCTGTCAGAAATTTAGGEST: gi|87041283|gb|CI195905.1|CI195905
genomic: AGGCACTGGAGTGCCTTGTTGCTTTACGGAAGGCCTGCATTATTGAACAGgtaatctctc ... tccattatagGAACCAAACGAATACAATGGATTCGTAACAAAGCTCTGTCAGAAATTTAGG
EST: AGGCACTGGAGTGCCTTGTTGCTTTACGGAAGGCCTGCATTATTGAACAG GAACCAAACGAATACAATGGATTCGTAACAAAGCTCTGTCAGAAATTTAGGEST: gi|86597699|gb|CI274690.1|CI274690
genomic: AGGCACTGGAGTGCCTTGTTGCTTTACGGAAGGCCTGCATTATTGAACAGgtaatctctc ... tccattatagGAACCAAACGAATACAATGGATTCGTAACAAAGCTCTGTCAGAAATTTAGG
EST: AGGCACTGGAGTGCCTTGTTGCTTTACGGAAGGCCTGCATTATTGAACAG GAACCAAACGAATACAATGGATTCGTAACAAAGCTCTGTCAGAAATTTAGGEST: gi|88270421|gb|CI385679.1|CI385679
genomic: AGGCACTGGAGTGCCTTGTTGCTTTACGGAAGGCCTGCATTATTGAACAGgtaatctctc ... tccattatagGAACCAAACGAATACAATGGATTCGTAACAAAGCTCTGTCAGAAATTTAGG
EST: GTTGCTTTACGGAAGGCCTGCATTATTG-ACAG GAACCAAACGAATACAATGGATTCGTAACAAAGCTCTGTCAGAAATTTAGG
genomic: GTTGCTTTACGGAAGGCCTGCATTATTGAACAGgtaatctctc ... tccattatagGAACCAAACGAATACAATGGATTCGTAACAAAGCTCTGTCAGAAATTTAGG
gtatagtttaaacatgcttgctcagttgtaacttaggtgttgttttccattatagGAACCAAACGAATACAATGGATTCGTAACAAAGCTCTGTCAGAAATTTAGGCCGGCTGGTGATAAAATTTTTTTGCAGCTTCTTTCGTCCAAGAAAGCTT
ttgtaac putative branch site (score: 4)
ttgttttcc putative PPT
tttaaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctctcctatggttattttcatttgattgcatggtagttagatgtaatccatgccccttattttgctgcgagacctcatgtatagtttaaacatgcttgctcagttgtaacttaggtgttgttttccattatagGAACCAAACGAATACAATGGATTCGTAACAAAGCTCTGTCAGAAATTTAGGCCGGCTGGTGATAAAATTTTTTTGCAGCTTCTTTCGTCCAAGAAAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA