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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgttcccagccttcctagcatcacttgtattcctcttgttactttgtagcctaccaagatctaacatgccccacatttttctcattcaggagGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCGAAGATTGACAGGCCAATGGGTGTTGTATGCTTCCGCACAGCACAAGACAGTA

Basic information

species Oryza sativa
transcript LOC_Os03g63430.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g63430.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G013750_T02 (Zea mays), 3'ss of exon 10
---------------------------------------------gtttgtgttcccagccttcctagcatcacttgt-attcctcttgttact----ttgtagcctaccaagatctaacatgccccacatttttctcattcaggagGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCGAAGATTGACAGGCCAATGGGTGTTGTATGCTTCCGCACAGCACAAGACAGTA
                                               || ||||    | |    || ||  | |||| |  | | || |  ||     |  |  |     | |||||||  || |  ||  || ||| |||||||||||||||| || ||||| |||||||| |||||||| || |||| ||||||||| |||||||| ||||| |||||  |||||||   ||  || |||    
gtttgtatcatacattgtattttctttgttatgccatctgcggcgtcttatgttaaatgtcccaata-cacgagttgtgaagcattttatagctgcagctacaatcgtgagatatctaactggcactgcacattactctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCGAAGATCGACAGGCCGATGGGAGTTGTGAGCTTCCGGGTAGTTCAGGACT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29658197|gb|CB654472.1|CB654472
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88666183|gb|CI716339.1|CI716339
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGNGTAAACTCAAAGTCGCTGTTTGC
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATG-GTAAACTCAAAGTCGCTGATTGC
EST: gi|88671843|gb|CI725378.1|CI725378
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|89173252|gb|CI721082.1|CI721082
EST:     CAAGGATTACCCTGAAGAGGCTCGCACATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88668545|gb|CI719502.1|CI719502
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88850202|gb|CI091695.1|CI091695
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88244531|gb|CI243653.1|CI243653
EST:     TGAAGAGGCTCGCAGATCTTCTTGGCTTGAGCTTGCAGGAG                       
genomic: TGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|86895618|gb|CI315936.1|CI315936
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88909038|gb|CI716762.1|CI716762
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88672218|gb|CI726334.1|CI726334
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|86538133|gb|CI178339.1|CI178339
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88249884|gb|CI249733.1|CI249733
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88671842|gb|CI725377.1|CI725377
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|86890279|gb|CI321456.1|CI321456
EST:     TTGCTTGAGCTTGCAGGAG                       
genomic: TTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|29664786|gb|CB661061.1|CB661061
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88272155|gb|CI388208.1|CI388208
EST:     CGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|29678375|gb|CB674650.1|CB674650
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88233122|gb|CI232971.1|CI232971
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88668239|gb|CI722978.1|CI722978
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88673479|gb|CI727592.1|CI727592
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCACAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88594922|gb|CI715078.1|CI715078
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88973665|gb|CI718093.1|CI718093
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88666273|gb|CI716429.1|CI716429
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|29620777|gb|CB625788.1|CB625788
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|86537599|gb|CI177805.1|CI177805
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88202525|gb|CI200880.1|CI200880
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|86835535|gb|CI347992.1|CI347992
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88903498|gb|CI089036.1|CI089036
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|5803423|gb|AI978393.1|AI978393
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|86429895|gb|CI082318.1|CI082318
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88594377|gb|CI714335.1|CI714335
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|86415189|gb|CI069592.1|CI069592
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88987972|gb|CI018027.1|CI018027
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88993508|gb|CI110329.1|CI110329
EST:     ATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: ATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88905110|gb|CI712409.1|CI712409
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|87029623|gb|CI257418.1|CI257418
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88671603|gb|CI725477.1|CI725477
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|29645308|gb|CB650315.1|CB650315
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|29637545|gb|CB642554.1|CB642554
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|86538105|gb|CI178311.1|CI178311
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|86413420|gb|CI067825.1|CI067825
EST:     AAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCGAAG
genomic: AAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCGAAG
EST: gi|88244685|gb|CI243807.1|CI243807
EST:     GCTTGAGCTTGCAGGAG                       
genomic: GCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88677287|gb|CI729945.1|CI729945
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88672862|gb|CI726978.1|CI726978
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|86482148|gb|CI124781.1|CI124781
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88245517|gb|CI245366.1|CI245366
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|5002921|gb|AU068030.1|AU068030
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|89190909|gb|CI392762.1|CI392762
EST:     CTGAGGAGGCTCGCAGATCTTC-TTGCTTGAGCTTGCAGGAG                       
genomic: CTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88671927|gb|CI725869.1|CI725869
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88676318|gb|CI730431.1|CI730431
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|27547668|gb|CA765594.2|CA765594
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88955676|gb|CI091965.1|CI091965
EST:     GAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: GAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88245532|gb|CI245381.1|CI245381
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88668077|gb|CI722816.1|CI722816
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88668946|gb|CI719903.1|CI719903
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|86430906|gb|CI083329.1|CI083329
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|25803582|gb|CA759543.1|CA759543
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|86414709|gb|CI069112.1|CI069112
EST:     AGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: AGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|10930623|gb|AU160897.1|AU160897
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88595329|gb|CI714150.1|CI714150
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|89180554|gb|CI044833.1|CI044833
EST:     GAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: GAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|89187486|gb|CI114446.1|CI114446
EST:     TCTTTGCTTGAGCTTGCAGGAG                       
genomic: TCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88671341|gb|CI723517.1|CI723517
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88905414|gb|CI712713.1|CI712713
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88972672|gb|CI717398.1|CI717398
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|6799243|gb|AU082194.1|AU082194
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88908759|gb|CI714901.1|CI714901
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88595223|gb|CI714044.1|CI714044
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88247845|gb|CI247694.1|CI247694
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88905676|gb|CI712975.1|CI712975
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88905977|gb|CI089563.1|CI089563
EST:     TTCTTTGCTTGAGCTTGCAGGAG                       
genomic: TTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|86522196|gb|CI162402.1|CI162402
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|86431173|gb|CI083596.1|CI083596
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|29664483|gb|CB660758.1|CB660758
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88246291|gb|CI246140.1|CI246140
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|88594302|gb|CI714260.1|CI714260
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|88669890|gb|CI724006.1|CI724006
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGTTTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
EST: gi|86426641|gb|CI071738.1|CI071738
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGGAG                       
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGC---AGgtttgtgttc ... cattcagg
EST: gi|300215653|gb|HO088279.1|HO088279
EST:     CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG                         GAGGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG
genomic: CAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagG---CAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 68 (upstream exon), 62 (downstream exon)
Score: 13

AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttc ... cattcaggagGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCGAAGATTGACAGGCCAATGGGTGTTGTATGCTTCCGCACAGCACAAGACAGTA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttactttgtagcctaccaagatctaacatgccccacatttttctcattcaggagGCAGAGAAACACCTTTCGGACATGGTAAACTCAAAGTCGCTGATTGCGAAGATTGACAGGCCAATGGGTGTTGTATGCTTCCGCACAGCACAAGACAGTA
                     atctaac  putative branch site (score: 13)
                               ccccacatttttctc  putative PPT
                                   acattttt  TA-rich tract