1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtgtgagcaatgtccatattatgtgtgtgttcaattggaaaattaaacaatactttctcactgttctttttgtaactcaaaagttttgttttttacccagGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCT
species | Oryza sativa |
transcript | LOC_Os03g62500.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAG GTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGEST: gi|88224520|gb|CI222700.1|CI222700
genomic: ACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGgtattctgcc ... ttttacccagGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGG
EST: ACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAG GTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTEST: gi|88274655|gb|CI395061.1|CI395061
genomic: ACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGgtattctgcc ... ttttacccagGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTT
EST: ACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAG GTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTT
genomic: ACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGgtattctgcc ... ttttacccagGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTT
aacaatactttctcactgttctttttgtaactcaaaagttttgttttttacccagGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCT
ttgtaac putative branch site (score: 19)
ttttgttttttaccc putative PPT
aaaagttttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgagcaatgtccatattatgtgtgtgttcaattggaaaattaaacaatactttctcactgttctttttgtaactcaaaagttttgttttttacccagGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCT
- - - - - - - - - - - - - - - - - - - - - -taaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcaaaa