1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgtgttgtcttatctttggtgcacattactgttttattttgtttcagtttctagttgtgaagaattaaatcgtgatttgtctgtgtagGCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAG
species | Oryza sativa |
transcript | LOC_Os03g61670.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGAGTATGCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGAT GCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAGEST: gi|86484126|gb|CI126759.1|CI126759
genomic: CTGAGTATGCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGATgtgtgttgtc ... gtctgtgtagGCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAG
EST: CTGAGTATGCCAAGAAATTTGCAGGAGAAACCTGGGCCAAGCATAAAGAT GCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAGEST: gi|88996487|gb|CI259991.1|CI259991
genomic: CTGAGTATGCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGATgtgtgttgtc ... gtctgtgtagGCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAG
EST: CTGAGTATGCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGAT GCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAGEST: gi|88968007|gb|CI098249.1|CI098249
genomic: CTGAGTATGCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGATgtgtgttgtc ... gtctgtgtagGCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAG
EST: GCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGAT GCTGAGAAAGCCGCCTCTGATGAAGCTGAGAAGAAGAGGCTTGAGGAGEST: gi|86484726|gb|CI127359.1|CI127359
genomic: GCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGATgtgtgttgtc ... gtctgtgtagGCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAG
EST: CTGAGTATGCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGAT GCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAGEST: gi|58664711|gb|CK053397.1|CK053397
genomic: CTGAGTATGCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGATgtgtgttgtc ... gtctgtgtagGCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAG
EST: CTGAGTATGCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGAT GCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAG
genomic: CTGAGTATGCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGATgtgtgttgtc ... gtctgtgtagGCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAG
ttattttgtttcagtttctagttgtgaagaattaaatcgtgatttgtctgtgtagGCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAG
tttgtct CT-rich tract
aagaattaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttgtcttatctttggtgcacattactgttttattttgtttcagtttctagttgtgaagaattaaatcgtgatttgtctgtgtagGCTGAGAAAGCCGCCTTTGATGAAGCTGAGAAGAAGAGGCTTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG