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...aatgctagaaagtcttataaactgaaacggagggagtaacatctaccatgcattattcatgttccaccgagctcaatctctcatcctcgtcttcaaccagGTGAGAGCGATGGAGCTGATTGACCAGATGGAAGGGAAGATGCGTGGGCCGTACAGTGGTGGCTTTGGAGGGGTTTCTTTCCGTGGAGACATGGACATCG
species | Oryza sativa |
transcript | LOC_Os03g61120.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TAGTGGTGCACCAAAG GTGAGAGCGATGGAGCTGATTGACCAGATGGAAGGGAAGATGCGTGGGCCGEST: gi|29673716|gb|CB669991.1|CB669991
genomic: TAGTGGTGCACCAAAGgtaaggaaat ... cttcaaccagGTGAGAGCGATGGAGCTGATTGACCAGATGGAAGGGAAGATGCGTGGGCCG
EST: ATGCTCTTCGAGCAGCATTGCCCGTTGGAACAGTTAGTGGTGCACCAAAG GTGAGAGCGATGGAGCTGATTGACCAGATGGAAGGGAAGATGCGTGGGCCGEST: gi|29645612|gb|CB650619.1|CB650619
genomic: ATGCTCTTCGAGCAGCATTGCCCGTTGGAACAGTTAGTGGTGCACCAAAGgtaaggaaat ... cttcaaccagGTGAGAGCGATGGAGCTGATTGACCAGATGGAAGGGAAGATGCGTGGGCCG
EST: ATGCTCTTCGAGCAGCATTGCCCGTTGGAACAGTTAGTGGTGCACCAAAG GTGAGAGCGATGGAGCTGATTGACCAGATGGAAGGGAAGATGCGTGGGCCGEST: gi|86495210|gb|CI137843.1|CI137843
genomic: ATGCTCTTCGAGCAGCATTGCCCGTTGGAACAGTTAGTGGTGCACCAAAGgtaaggaaat ... cttcaaccagGTGAGAGCGATGGAGCTGATTGACCAGATGGAAGGGAAGATGCGTGGGCCG
EST: ATGCTCTTCGAGCAGCATTGCCCGTTGGAACAGTTAGTGGTGCACCAAAG GTGAGAGCGATGGAGCTGATTGACCAGATGGAAGGGAAGATGCGTGGGCCG
genomic: ATGCTCTTCGAGCAGCATTGCCCGTTGGAACAGTTAGTGGTGCACCAAAGgtaaggaaat ... cttcaaccagGTGAGAGCGATGGAGCTGATTGACCAGATGGAAGGGAAGATGCGTGGGCCG
ccatgcattattcatgttccaccgagctcaatctctcatcctcgtcttcaaccagGTGAGAGCGATGGAGCTGATTGACCAGATGGAAGGGAAGATGCGTGGGCCGTACAGTGGTGGCTTTGGAGGGGTTTCTTTCCGTGGAGACATGGACATCG
tctctcatcctcgtct CT-rich tract
attattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgctagaaagtcttataaactgaaacggagggagtaacatctaccatgcattattcatgttccaccgagctcaatctctcatcctcgtcttcaaccagGTGAGAGCGATGGAGCTGATTGACCAGATGGAAGGGAAGATGCGTGGGCCGTACAGTGGTGGCTTTGGAGGGGTTTCTTTCCGTGGAGACATGGACATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - -ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccaccg