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...atgagcatctgtttatgtaccttggtttatgatgttcattgtccttagtatatacattgttgctttttgcttcctatattgatagttaacaattatgcagGTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCAAGAACCCTGGCTGAAAATGCTGGGCTTAGTGCTATGGAGATAATATCT
species | Oryza sativa |
transcript | LOC_Os03g59020.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGG GTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCEST: gi|29667203|gb|CB663478.1|CB663478
genomic: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGGgtaagtatat ... aattatgcagGTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCC
EST: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGG GTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCEST: gi|29676290|gb|CB672565.1|CB672565
genomic: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGGgtaagtatat ... aattatgcagGTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCC
EST: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGG GTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCEST: gi|58687966|gb|CK076653.1|CK076653
genomic: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGGgtaagtatat ... aattatgcagGTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCC
EST: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGG GTTGGACCAGTATGCCATTGCCAAATTTGCTGAAAGTTTTGAAATGGTTCCEST: gi|86849375|gb|CI297824.1|CI297824
genomic: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGGgtaagtatat ... aattatgcagGTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCC
EST: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGG GTTGGACCAGTATGCCATTGCAAAATTTGTTGAAAGTTTTGAAATGGTTCCEST: gi|24208380|gb|AU225407.1|AU225407
genomic: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGGgtaagtatat ... aattatgcagGTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCC
EST: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGG GTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCEST: gi|29616022|gb|CB621034.1|CB621034
genomic: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGGgtaagtatat ... aattatgcagGTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCC
EST: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGG GTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCEST: gi|58679992|gb|CK068679.1|CK068679
genomic: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGGgtaagtatat ... aattatgcagGTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCC
EST: GAAATAGAATTGGCAAGGAGATTGAAGG-ATTTTCTCTGAAGGAAACAGG GTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCC
genomic: GAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGGgtaagtatat ... aattatgcagGTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCC
tagtatatacattgttgctttttgcttcctatattgatagttaacaattatgcagGTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCAAGAACCCTGGCTGAAAATGCTGGGCTTAGTGCTATGGAGATAATATCT
agttaac putative branch site (score: 39)
tatattgatagttaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgagcatctgtttatgtaccttggtttatgatgttcattgtccttagtatatacattgttgctttttgcttcctatattgatagttaacaattatgcagGTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCAAGAACCCTGGCTGAAAATGCTGGGCTTAGTGCTATGGAGATAATATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- gagcatc
- - - - - - - - - - - - - - atgatgt