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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatctgcccctatgtggttttttttttaatttacttaaaatagatttgcaaaatctcaatatcagctccatgatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGTTGCTGATTTCTTCGATGCAGCAGTGAACTTGGCTTTGAAGGTTAAGGC

Basic information

species Oryza sativa
transcript LOC_Os03g52840.3
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g52840.3 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 12
gtaaaatctgcccctatgtggttttttttttaatttacttaaaatagatttgcaaaatctcaatatcagctccatgatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGTTGCTGATTTCTTCGATGCAGCAGTGAACTTGGCTTTGAAGGTTAAGGC
|||  || |      ||  |  | ||| | || |||| |   |||   |||||||| ||| ||||| |||||     |||||||||||||||||| || || || |||||||||||||| || || || ||||| |||||||| ||||||||||||||||||||  |||| |||||| |||||||
gtacgatattttgtcata-gaatgtttgtatactttattcttaat---tttgcaaattcttaatattagctctcccgtcatgcagGAACCCCAGCCCTTACGTCGAGAGGATTTGTTGAAGAAGATTTCGCTAAAGTTGCTGACTTCTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGC

upper sequence: LOC_Os03g52840.3 (Oryza sativa), 3'ss of exon 10
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 13
gtaaaatctgcccctatgtggttttttttttaatttacttaaaatagatttgcaaaatctcaatatcagctccatgatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGTTGCTGATTTCTTCGATGCAGCAGTGAACTTGGCTTTGAAGGTTAAGGC
       | | | || ||| | || | ||   ||||       ||   ||     | |  ||  ||        ||   || |||||||||| || || || || |||||||||||||||||||| ||||  ||||| || || || || ||||||||||||||  | ||| ||||| |||||| 
----gtacaggctctttgttgcttctgttaccattttt-----atgtcttcagtcagttacatgatttctcttgtgga-attcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTCAAGGTAGCAGAGTTTTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGG

upper sequence: LOC_Os03g52840.3 (Oryza sativa), 3'ss of exon 10
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 14
gtaaaatctgcccctatgtggttttttttttaatttacttaaaatagatttgcaaaatctcaatatcagctccatgatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGTTGCTGATTTCTTCGATGCAGCAGTGAACTTGGCTTTGAAGGTTAAGGC
||| || ||    || ||| | || | || ||||||   |    || |||  |    |  ||  ||        ||   || |||||||||| || || || || |||||||||||||||||||| |||| |||||| || || ||||| |||||||||||||| |||||| ||||| |||||| 
gtacaagct----ctttgttgcttctattataatttttatgtttta-attcac----ttacatgatttctcttgtgga-attcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAGGTAGCAGAGTTCTTTGATGCAGCAGTGAAGTTGGCTGTGAAGATTAAGGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58691302|gb|CK079989.1|CK079989
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|38474524|gb|CF958657.1|CF958657
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|88844991|gb|CI022345.1|CI022345
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29641600|gb|CB646607.1|CB646607
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|38479794|gb|CF963883.1|CF963883
EST:     ACAGTTCCTGGCTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGAT
genomic: ACAGTTCCTGG-TGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGAT
EST: gi|33380560|gb|CF195903.1|CF195903
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29667992|gb|CB664267.1|CB664267
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|58692752|gb|CK081439.1|CK081439
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|89189479|gb|CI049018.1|CI049018
EST:     GGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: GGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29687054|gb|CB683329.1|CB683329
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29678031|gb|CB674306.1|CB674306
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29614139|gb|CB619152.1|CB619152
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29613559|gb|CB618572.1|CB618572
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29621133|gb|CB626144.1|CB626144
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|88226617|gb|CI226533.1|CI226533
EST:     GGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: GGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29672939|gb|CB669214.1|CB669214
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|4716856|gb|AU057972.1|AU057972
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|38474897|gb|CF959030.1|CF959030
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|88197090|gb|CI196940.1|CI196940
EST:     GTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: GTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29633900|gb|CB638909.1|CB638909
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29624607|gb|CB629618.1|CB629618
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29614629|gb|CB619642.1|CB619642
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|86415131|gb|CI069534.1|CI069534
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29670802|gb|CB667077.1|CB667077
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29618932|gb|CB623944.1|CB623944
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29622695|gb|CB627706.1|CB627706
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29638079|gb|CB643088.1|CB643088
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|11442748|gb|BF430651.1|BF430651
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29675548|gb|CB671823.1|CB671823
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|38476360|gb|CF960493.1|CF960493
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTCGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29629705|gb|CB634714.1|CB634714
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTC
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTC
EST: gi|86903531|gb|CI323014.1|CI323014
EST:     GAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATGTG-TGAGGAGGACTTTGCTAAGN
genomic: GAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|88971400|gb|CI017714.1|CI017714
EST:     CAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29687894|gb|CB684169.1|CB684169
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29662689|gb|CB658964.1|CB658964
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29621679|gb|CB626690.1|CB626690
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29664044|gb|CB660319.1|CB660319
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|86491160|gb|CI133793.1|CI133793
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29646106|gb|CB651113.1|CB651113
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29681407|gb|CB677682.1|CB677682
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|33663440|gb|CF294407.1|CF294407
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|86428899|gb|CI075580.1|CI075580
EST:     CAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29646446|gb|CB651453.1|CB651453
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|38482519|gb|CF966548.1|CF966548
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29665919|gb|CB662194.1|CB662194
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29629706|gb|CB634715.1|CB634715
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29615275|gb|CB620287.1|CB620287
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29687453|gb|CB683728.1|CB683728
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29613482|gb|CB618495.1|CB618495
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|58692040|gb|CK080727.1|CK080727
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|86414951|gb|CI069354.1|CI069354
EST:     GGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: GGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|88985160|gb|CI006814.1|CI006814
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29630143|gb|CB635152.1|CB635152
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|55410185|gb|CV722561.1|CV722561
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|38472677|gb|CF956809.1|CF956809
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|86518438|gb|CI158644.1|CI158644
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|4714774|gb|AU055891.1|AU055891
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCNGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|38477716|gb|CF961849.1|CF961849
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATCTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|88968917|gb|CI098974.1|CI098974
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|109974734|gb|DT807076.1|DT807076
EST:     AGGAGGCATTATGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: AGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|88980655|gb|CI022368.1|CI022368
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|86261552|gb|CI017294.1|CI017294
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|29674140|gb|CB670415.1|CB670415
EST:     CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|38478928|gb|CF963061.1|CF963061
EST:     CTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG                         GAACCCCAGCACTGACCTCGAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
genomic: CTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: gi|38474875|gb|CF959008.1|CF959008
EST:     CAGCTATGGTACCAGGAGGCATCAAGATGG                         GAACCCCAGCACTGACCTCAAGAGGATTTGTTAGAAGAGGACTTTGCTAAG
genomic: CAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTT-GAGGAGGACTTTGCTAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 284

TCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGTTGCTGATTTCTTCGATGCAGCAGTGAACTTGGCTTTGAAGGTTAAGGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatttacttaaaatagatttgcaaaatctcaatatcagctccatgatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGTTGCTGATTTCTTCGATGCAGCAGTGAACTTGGCTTTGAAGGTTAAGGC
 ttttaat  putative branch site (score: 284)
     tacttaaaatagattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaatctgcccctatgtggttttttttttaatttacttaaaatagatttgcaaaatctcaatatcagctccatgatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGTTGCTGATTTCTTCGATGCAGCAGTGAACTTGGCTTTGAAGGTTAAGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG