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gtaattcctggatgctaatatctgtttagaaatagcatttccaaagtaaccgttcaataatgatgtgaactgtttgttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTTGGTCCGGAAACTCGTGCACGTGCTCAAGCGAGCATCTCTGATTGTCTT
species | Oryza sativa |
transcript | LOC_Os03g51650.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCTACTTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTEST: gi|29669369|gb|CB665644.1|CB665644
genomic: TCTACTTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTEST: gi|87030251|gb|CI270261.1|CI270261
genomic: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: TTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTEST: gi|58598328|gb|CK008856.1|CK008856
genomic: TTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTEST: gi|4715479|gb|AU056596.1|AU056596
genomic: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGC-AGTCCTEST: gi|4715480|gb|AU056597.1|AU056597
genomic: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: ACAGATTCCCAAANCCCTTTTG CTGTCTACCTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCEST: gi|86502892|gb|CI145525.1|CI145525
genomic: ACAGATTCCC-AATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTA-CTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCC
EST: TATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTEST: gi|87021173|gb|CI271980.1|CI271980
genomic: TATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: CCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTEST: gi|25803688|gb|CA759649.1|CA759649
genomic: CCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: TCCCAAATCCCTTTTG CTGTCTACTTGATGTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTEST: gi|29668996|gb|CB665271.1|CB665271
genomic: TCCC-AATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTEST: gi|29669368|gb|CB665643.1|CB665643
genomic: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTTCTEST: gi|29676184|gb|CB672459.1|CB672459
genomic: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTEST: gi|88376847|gb|CI639172.1|CI639172
genomic: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTEST: gi|29625677|gb|CB630688.1|CB630688
genomic: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTEST: gi|157650726|gb|EX450360.1|EX450360
genomic: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTEST: gi|396941381|gb|HO188590.1|HO188590
genomic: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTEST: gi|34475487|gb|CF452785.1|CF452785
genomic: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
EST: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTG CTGTCTACTTGATCCGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
genomic: CCTATCCGTAGTGGAGTTCTACTTCCTGAACAGATTCCCAATCCCTTTTGgtaattcctg ... gttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCT
aatagcatttccaaagtaaccgttcaataatgatgtgaactgtttgttcctgcagCTGTCTACTTGATCTGCATTTCCATATTGGCTGGATTCTGGGGCCAGTCCTTGGTCCGGAAACTCGTGCACGTGCTCAAGCGAGCATCTCTGATTGTCTT
aagtaac putative branch site (score: 2)
tttgttcct putative PPT
ttcaataat TA-rich tract