1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacatgatagttgacttcagcctgttcatattgttaatttagatcctattaagctggtcaagttgtttcatttcctctatgtttacagttctttttgcgcatccacatccactttctatactgatttcctgcctggttgccttttggttttaagGTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAG
species | Oryza sativa |
transcript | LOC_Os03g49900.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAGGCAGCAAAGAAGAGCAAGCCCGGTTATTCTATACTGAATCTACTGG GTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAAEST: gi|66912809|gb|CX099657.1|CX099657
genomic: GAAGGCAGCAAAGAAGAGCAAGCCCGGTTATTCTATACTGAATCTACTGGgtacatgata ... tggttttaagGTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAA
EST: GAAGGCAGCAAAGAAGAGCAAGCCCGGTTATTCTATACTGAATCTACTGG GTACAACACATTTTGTGGTTATCCACCTGAGGTAGTCAGGAAAATGCCTAAEST: gi|29659984|gb|CB656259.1|CB656259
genomic: GAAGGCAGCAAAGAAGAGCAAGCCCGGTTATTCTATACTGAATCTACTGGgtacatgata ... tggttttaagGTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAA
EST: GAAGGCAGCAAAGAAGAGCAAGCCCGGTTATTCTATACTGAATCTACTGG GTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAAEST: gi|29638901|gb|CB643910.1|CB643910
genomic: GAAGGCAGCAAAGAAGAGCAAGCCCGGTTATTCTATACTGAATCTACTGGgtacatgata ... tggttttaagGTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAA
EST: GCAGCAAAGAAGAGCAAGCCCGGTTATTCTATACTGAATCTACTGG GTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAAEST: gi|29668947|gb|CB665222.1|CB665222
genomic: GCAGCAAAGAAGAGCAAGCCCGGTTATTCTATACTGAATCTACTGGgtacatgata ... tggttttaagGTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAA
EST: GAAGGCAGCAAAGAAGAGCAAGCCCGGTTATTCTATACTGAATCTACTGG GTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAAEST: gi|29658595|gb|CB654870.1|CB654870
genomic: GAAGGCAGCAAAGAAGAGCAAGCCCGGTTATTCTATACTGAATCTACTGGgtacatgata ... tggttttaagGTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAA
EST: GCAAAGAAGAGCAAGCCCGGTTATTCTATACTGAATCTACTGG GTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAA
genomic: GCAAAGAAGAGCAAGCCCGGTTATTCTATACTGAATCTACTGGgtacatgata ... tggttttaagGTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAA
catccacatccactttctatactgatttcctgcctggttgccttttggttttaagGTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAG
tactgat putative branch site (score: 49)
ttgcctttt putative PPT
tttctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatgatagttgacttcagcctgttcatattgttaatttagatcctattaagctggtcaagttgtttcatttcctctatgtttacagttctttttgcgcatccacatccactttctatactgatttcctgcctggttgccttttggttttaagGTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG