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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcctttttcactattactagatgctatctgaggcaaatgtatataattattgcatcatatttttttgtgattttgtaaaatgctaccttaactttgggcagtagATAACAGTGAGGTAGGTTCTATGTACAAGACCATTGAAGAGCTAGAGCGGAAGCTTTACCATCCTTTGTCAATCACTTTGCTTCACACACGGGAAACACT

Basic information

species Oryza sativa
transcript LOC_Os03g49730.2
intron # 10
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58684796|gb|CK073483.1|CK073483
EST:     CGATGTACTACTATTATCTGACAAAGTCTCTTCCTTAGTTTCATCTGGAATA                        
genomic: CGATGTACTACTATTATCTGACAAAGTCTCTTCCTTAGTTTCATCTGG-A-Agtatcctttt ... tgggcagta
EST: gi|58684796|gb|CK073483.1|CK073483
EST:     CGATGTACTACTATTATCTGACAAAGTCTCTTCCTTAGTTTCATCTGGAATA                        
genomic: CGATGTACTACTATTATCTGACAAAGTCTCTTCCTTAGTTTCATCTGG-A-Agtatcctttt ... tgggcagta
EST: gi|7332557|gb|AU085903.1|AU085903
EST:     CGATGTACTACTATTATCTGACAAAGTCTCTTCCTTAGTTTCATCTGGAA                         ATAACAGTGAGGTAGGTTCTATGTACAAGACCATTGAAGAGCTAGAGCGGA
genomic: CGATGTACTACTATTATCTGACAAAGTCTCTTCCTTAGTTTCATCTGGAAgtatcctttt ... tgggcagtagATAACAGTGAGGTAGGTTCTATGTACAAGACCATTGAAGAGCTAGAGCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcatcatatttttttgtgattttgtaaaatgctaccttaactttgggcagtagATAACAGTGAGGTAGGTTCTATGTACAAGACCATTGAAGAGCTAGAGCGGAAGCTTTACCATCCTTTGTCAATCACTTTGCTTCACACACGGGAAACACT
 taccttaac  putative branch site 
     tcatatttttttgtga  TA-rich tract