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...tgacaaataatttttatttgctcctttttatttccatgctgtatccatgtttactccatacaggacaccataataatctgaactctgtttcttcacttagTTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGATGGAATTAAAGAAGTAATAACTGCGAGTGCTCTCAGAAGGAGAGAACGAACAG
species | Oryza sativa |
transcript | LOC_Os03g49420.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACACACAAATATGTGCAAGCATGCTGGAATCGCTGAATGAATCAATACAG TTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGATGGAEST: gi|29629240|gb|CB634251.1|CB634251
genomic: ACACACAAATATGTGCAAGCATGCTGGAATCGCTGAATGAATCAATACAGgtcttgtatt ... cttcacttagTTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGATGGA
EST: ACACACAAATATGTGCAAGCATGCTGGAATCGCTGAATGAATCAATACAG TTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTGGATGGAEST: gi|29681490|gb|CB677765.1|CB677765
genomic: ACACACAAATATGTGCAAGCATGCTGGAATCGCTGAATGAATCAATACAGgtcttgtatt ... cttcacttagTTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGATGGA
EST: ACACACAAATATGTGCAAGCATGCTGGAATCGCTGAATGAATCAATACAG TTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGATGGA
genomic: ACACACAAATATGTGCAAGCATGCTGGAATCGCTGAATGAATCAATACAGgtcttgtatt ... cttcacttagTTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGATGGA
catgtttactccatacaggacaccataataatctgaactctgtttcttcacttagTTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGATGGAATTAAAGAAGTAATAACTGCGAGTGCTCTCAGAAGGAGAGAACGAACAG
ctctgtttcttcactt CT-rich tract
ataataatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacaaataatttttatttgctcctttttatttccatgctgtatccatgtttactccatacaggacaccataataatctgaactctgtttcttcacttagTTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGATGGAATTAAAGAAGTAATAACTGCGAGTGCTCTCAGAAGGAGAGAACGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA