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...tttctcttttgttcatatgactagtattttgacagttggatatatcttatatacacaacgttgcttgtgccgctctttacttgaataacttcgcttgcagGATTGAAGGTGACAAAGTAGGGAGCTATACAATCTTCTTAAGTTTCAATAAACTTGACAATTGGACAAAAGCACTAAAATACATGCTGTGCAACTTGAAG
species | Oryza sativa |
transcript | LOC_Os03g44200.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GATAAAGAGAACAATGTACCACCTGACAAGTCATTGAAGCTCCCATATAA GATTGAAGGTGACAAAGTAGGGAGCTATACAATCTTCTTAAGTTTCAATAAEST: gi|33807311|gb|CF329536.1|CF329536
genomic: GATAAAGAGAACAATGTACCACCTGACAAGTCATTGAAGCTCCCATATAAgtaagtttta ... tcgcttgcagGATTGAAGGTGACAAAGTAGGGAGCTATACAATCTTCTTAAGTTTCAATAA
EST: GATAAAGAGAACAATGTACCACCTGACAAGTCATTGAAGCTCCCATATAA GATTGAAGGTGACAAAGTAGGGAGCTATACAATCTTCTTAAGTTTCAATAA
genomic: GATAAAGAGAACAATGTACCACCTGACAAGTCATTGAAGCTCCCATATAAgtaagtttta ... tcgcttgcagGATTGAAGGTGACAAAGTAGGGAGCTATACAATCTTCTTAAGTTTCAATAA
cttatatacacaacgttgcttgtgccgctctttacttgaataacttcgcttgcagGATTGAAGGTGACAAAGTAGGGAGCTATACAATCTTCTTAAGTTTCAATAAACTTGACAATTGGACAAAAGCACTAAAATACATGCTGTGCAACTTGAAG
gaataac putative branch site (score: 11)
cttcgctt CT-rich tract
ttgaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctcttttgttcatatgactagtattttgacagttggatatatcttatatacacaacgttgcttgtgccgctctttacttgaataacttcgcttgcagGATTGAAGGTGACAAAGTAGGGAGCTATACAATCTTCTTAAGTTTCAATAAACTTGACAATTGGACAAAAGCACTAAAATACATGCTGTGCAACTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG