1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...ttccaggaatccaggttcttggtgaacagttattgcttcaagtttcttgacaattagaccctcttgagttaaactatttctgttacaaaaaaccttccagGTTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGACGCGCATCAGAATTTTTGAGGAACTACTTCTCTAGCTTGGTGGACTTCA
species | Oryza sativa |
transcript | LOC_Os03g42750.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCAGCCTTGAAGTGCCAAATCTGGATCCATGCTATGTTAACATGCGAGCT GTTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGAEST: gi|58676190|gb|CK064877.1|CK064877
genomic: GCAGCCTTGAAGTGCCAAATCTGGATCCATGCTATGTTAACATGCGAGCTgtaagctatg ... aaccttccagGTTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGA
EST: GCAGCCTTGAAGTGCCAAATCTGGATCCATGCTATGTTAACATGCGAGCT GTTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGAEST: gi|38469714|gb|CF953845.1|CF953845
genomic: GCAGCCTTGAAGTGCCAAATCTGGATCCATGCTATGTTAACATGCGAGCTgtaagctatg ... aaccttccagGTTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGA
EST: GCAGCCTTGAAGTGCCAAATCTGGATCCATGCTATGTTAACATGCGAGCT GTTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGA
genomic: GCAGCCTTGAAGTGCCAAATCTGGATCCATGCTATGTTAACATGCGAGCTgtaagctatg ... aaccttccagGTTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGA
cttgacaattagaccctcttgagttaaactatttctgttacaaaaaaccttccagGTTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGACGCGCATCAGAATTTTTGAGGAACTACTTCTCTAGCTTGGTGGACTTCA
tcttgac putative branch site (score: 3)
ccttcc putative PPT
ttaaactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccaggaatccaggttcttggtgaacagttattgcttcaagtttcttgacaattagaccctcttgagttaaactatttctgttacaaaaaaccttccagGTTAGGGAAAAAAGAGCAGAACTGGAGAAACTGAAGACAACTTTTGTTCGACGCGCATCAGAATTTTTGAGGAACTACTTCTCTAGCTTGGTGGACTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA