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gtgagttttggcatatggacttgctacatttgatttgcatggtctatcaatgtattcaatgaagatgttattcttatatgttactactttatttccaatgatgggttaatcagtaatcacacatgtgctcatctcaatacttagGTACCAAATGCAACACCAACAGCAGCCTCTGCTAGTTCAGATTTATATGGTGCTGCAGTTTTGGATGCTTGTCAGCAAATTATGGCTCGGATGGAACCTG
species | Oryza sativa |
transcript | LOC_Os03g31550.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCAATATCCCTCTTAGCTCTGTATTTATCTCAGAAACAAGCACTGATAAG GTACCAAATGCAACACCAACAGCAGCCTCTGCTAGTTCAGATTTATATGGTEST: gi|218495632|gb|FG967039.1|FG967039
genomic: TCAATATCCCTCTTAGCTCTATATTTATCTCAGAAACAAGCACTGATAAGgtgagttttg ... caatacttagGTACCAAATGCAACACCAACAGCAGCCTCTGCTAGTTCAGATTTATATGGT
EST: TCAATATCCCTCTTAGCTCTGTATTTATCTCAGAAACAAGCACTGATAAG GTACCAAATGCAACACCAACAGCAGCCTCTGCTAGTTCAGATTTATATGGTEST: gi|29675056|gb|CB671331.1|CB671331
genomic: TCAATATCCCTCTTAGCTCTATATTTATCTCAGAAACAAGCACTGATAAGgtgagttttg ... caatacttagGTACCAAATGCAACACCAACAGCAGCCTCTGCTAGTTCAGATTTATATGGT
EST: TCAATATCCCTCTTAGCTCTATATTTATCTCAGAAACAAGCACTGATAAG GTACCAAATGCAACACCAACAGCAGCCTCTGCTAGTTCAGATTTATATGGT
genomic: TCAATATCCCTCTTAGCTCTATATTTATCTCAGAAACAAGCACTGATAAGgtgagttttg ... caatacttagGTACCAAATGCAACACCAACAGCAGCCTCTGCTAGTTCAGATTTATATGGT
tatttccaatgatgggttaatcagtaatcacacatgtgctcatctcaatacttagGTACCAAATGCAACACCAACAGCAGCCTCTGCTAGTTCAGATTTATATGGTGCTGCAGTTTTGGATGCTTGTCAGCAAATTATGGCTCGGATGGAACCTG
ggttaat putative branch site (score: 4)
ctcatctc putative PPT
aatactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttggcatatggacttgctacatttgatttgcatggtctatcaatgtattcaatgaagatgttattcttatatgttactactttatttccaatgatgggttaatcagtaatcacacatgtgctcatctcaatacttagGTACCAAATGCAACACCAACAGCAGCCTCTGCTAGTTCAGATTTATATGGTGCTGCAGTTTTGGATGCTTGTCAGCAAATTATGGCTCGGATGGAACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA