1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acacgactgattgttagaagaaaatttaaagttgacccgtctctataatgtactgagtctccgctgtatctcatgaccaagtaccttgtttgacctgaagCAGGTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTTGCAACATAT
species | Oryza sativa |
transcript | LOC_Os03g27960.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTC-A -A-GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATEST: gi|86841010|gb|CI335151.1|CI335151
genomic: CTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAAgtaagtattt ... tgacctgaagCAGGTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGAT
EST: TCATAGTTGCTGCGAGCTTCTTCGTACATTTTGATCCCGATTC-A -A-GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATEST: gi|88663342|gb|CI480446.1|CI480446
genomic: TCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAAgtaagtattt ... tgacctgaagCAGGTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGAT
EST: CTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTC-A -A-GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATEST: gi|88661319|gb|CI453433.1|CI453433
genomic: CTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAAgtaagtattt ... tgacctgaagCAGGTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGAT
EST: CTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTC-A -A-GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATEST: gi|33793120|gb|CF322441.1|CF322441
genomic: CTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAAgtaagtattt ... tgacctgaagCAGGTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGAT
EST: CTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAA CAGGTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATEST: gi|87020102|gb|CI277834.1|CI277834
genomic: CTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAAgtaagtattt ... tgacctgaagCAGGTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGAT
EST: CTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTC-A -A-GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATEST: gi|25801152|gb|CA757113.1|CA757113
genomic: CTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAAgtaagtattt ... tgacctgaagCAGGTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGAT
EST: CTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTC-A -A-GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGAT
genomic: CTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAAgtaagtattt ... tgacctgaagCAGGTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGAT
taatgtactgagtctccgctgtatctcatgaccaagtaccttgtttgacctgaagCAGGTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTTGCAACATAT
gtttgac putative branch site (score: 4)
ccttgttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacgactgattgttagaagaaaatttaaagttgacccgtctctataatgtactgagtctccgctgtatctcatgaccaagtaccttgtttgacctgaagCAGGTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTTGCAACATAT
- - - ctgattg
- - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgacc