1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tctactgaactaatggcttgaacaagtaaaagtgtggcaaatttttttacaccttttgtatattctacctaccctaatgctgtttctaaacgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCTTTGGACTTGTTCTTGCTGGGGTCGGAGCATATGCGGTGTATAAATACAG
species | Oryza sativa |
transcript | LOC_Os03g21720.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCA GCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCTEST: gi|29642136|gb|CB647143.1|CB647143
genomic: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCAgtgagtaacc ... cgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCT
EST: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCA GCAAGGAGGGTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCTEST: gi|87010695|gb|CI312387.1|CI312387
genomic: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCAgtgagtaacc ... cgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCT
EST: GTGTGACCGTAACCACATGTTATACATGAGAGAGCATTACACTTGTCTCA GCAAGGAGGCTACGTTAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCTEST: gi|29665177|gb|CB661452.1|CB661452
genomic: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCAgtgagtaacc ... cgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCT
EST: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCA GCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCTEST: gi|29663536|gb|CB659811.1|CB659811
genomic: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCAgtgagtaacc ... cgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCT
EST: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCA GCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCTEST: gi|58687228|gb|CK075915.1|CK075915
genomic: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCAgtgagtaacc ... cgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCT
EST: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCA GCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCTEST: gi|38479499|gb|CF963610.1|CF963610
genomic: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCAgtgagtaacc ... cgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCT
EST: TTGTGGCGGTAACAACATGTTATACATGAGAGAGGATGACACTTGTCTCA GCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCTEST: gi|218494604|gb|FG959186.1|FG959186
genomic: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCAgtgagtaacc ... cgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCT
EST: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCA GCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTAATTTCCTEST: gi|300215578|gb|HO088204.1|HO088204
genomic: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCAgtgagtaacc ... cgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCT
EST: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCA GCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCTEST: gi|14571249|gb|BI118617.1|BI118617
genomic: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCAgtgagtaacc ... cgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCT
EST: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCA GCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCTEST: gi|86902901|gb|CI312278.1|CI312278
genomic: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCAgtgagtaacc ... cgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCT
EST: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCA GCAAGNAGGCTACGTCAGCTGTTGGCTAGAGTTTTCTGTGGGTTATTTTCTEST: gi|58595298|gb|CF993606.1|CF993606
genomic: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCAgtgagtaacc ... cgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCT
EST: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCA GCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCT
genomic: TTGTGGCGGTAACAACATGTTATACATGAGAGAGCATGACACTTGTCTCAgtgagtaacc ... cgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCT
tttacaccttttgtatattctacctaccctaatgctgtttctaaacgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCTTTGGACTTGTTCTTGCTGGGGTCGGAGCATATGCGGTGTATAAATACAG
ttctaaa putative branch site (score: 52)
ttttgtatattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctactgaactaatggcttgaacaagtaaaagtgtggcaaatttttttacaccttttgtatattctacctaccctaatgctgtttctaaacgatatgcagGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCTTTGGACTTGTTCTTGCTGGGGTCGGAGCATATGCGGTGTATAAATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - gaactaa
- - - - - - - - - -gaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt