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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccatttgaagatatttttgtcatttgattttcccaaatacattacaaaaaccatgttatgtctttctctttcaatctcttcatgtgtgccatgttccagGACGTTGTTGATGGCATTGAGTTTGCTAGGGGAGACCCTAAGACTACATGGGGTTCAGTTCGTGCAGCAATGGGACATCCAGAGCCCTTTCCGCTTTATT

Basic information

species Oryza sativa
transcript LOC_Os03g20420.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g20420.2 (Oryza sativa), 3'ss of exon 10
lower sequence: AT5G26120.1 (Arabidopsis thaliana), 3'ss of exon 10
tccatttgaagatatttttgtcatttgattttcccaaatacattacaaaaaccatgtta-tgtctttctctttcaatctcttcatgtgtgcca-tgttccagGACGTTGTTGATGGCATTGAGTTTGCTAGGGGAGACCCTAAGACTACATGGGGTTCAGTTCGTGCAGCAATGGGACATCCAGAGCCCTTTCCGCTTTATT
       | | |    |    | ||  |||||   ||| | | |   |  |     ||| |          || ||        ||| |  |  |||   |||| |   |||| || || ||||||||| | |||||  ||||  |||||||||| || ||||| || |||||||||||||||||||| |||   ||  | |
-------gtatactcatgaaactttctattttaataaagagagtgatagtaattcattagtaagccaaaaattaaactaaaatgtgtatttctctgtctaagGAAGCGATTGACGGTATAGAGTTTGCTCGTGGAGATTCTAATTCTACATGGGGATCGGTTCGAGCTGCAATGGGACATCCAGAGCCTTTTGAACTGAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|157650374|gb|EX450008.1|EX450008
EST:     CCAGCCTTAACGAACAAATTCCATCTGCAACAATAGCTGCTTTTGTAAAG                         GACGTTGTTGATGGCATTGAGTTTGCTAGGGGAGACCCTAAGACTACATGG
genomic: CCAGCCTTAACGAACAAATTCCATCTGCAACAATAGCTGCTTTTGTAAAGgtttgtgctc ... catgttccagGACGTTGTTGATGGCATTGAGTTTGCTAGGGGAGACCCTAAGACTACATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaaaccatgttatgtctttctctttcaatctcttcatgtgtgccatgttccagGACGTTGTTGATGGCATTGAGTTTGCTAGGGGAGACCCTAAGACTACATGGGGTTCAGTTCGTGCAGCAATGGGACATCCAGAGCCCTTTCCGCTTTATT
        atgttat  TA-rich tract