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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgttagatacaatcatttaagctattactttctaggtgtgggtctttgggaacttgttgatttgtttttaacacatgggtatttccctttactttacagATCATCTTTTTGGAAACAATATGTAATGACCAAAATGTTCTCGAGAGAAATATGCGCTTGAAAGTTCAACGAAGTCCTGATTATGCGGAACA

Basic information

species Oryza sativa
transcript LOC_Os03g18310.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18310.3 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM5G824405_T02 (Zea mays), 3'ss of exon 9
--ttgttagatacaatcatttaagctattactttctaggtgtgggtctttgggaacttgttgatttgtttttaacacatgggtatttccctttactttacagATCATCTTTTTGGAAACAATATGTAATGACCAAAATGTTCTCGAGAGAAATATGCGCTTGAAAGTTCAACGAAGTCCTGATTATGCGGAACA
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agtcgcagcatatgtacatt-atggagctcctgtgctcctgtatgatttgggtgtattact-atttccatttaacatatgggtcctcgcctttgctttctagATCATCTTTTTGGAAACATTATGTAATGACCAAGATGTTCTTGAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58689570|gb|CK078257.1|CK078257
EST:     CAAGAAACCGGAGAAATATGCTGATGAAAATGGCGGAAGGCAAGTGTAAG                         ATCATCTTTTTGGAAACAATATGTAATGACCAAAATGTTCTCGAGAGAAAT
genomic: CAAGAAACCGGAGAAATATGCTGATGAAAATGGCGGAAGGCAAGTGTAAGgtataactga ... tactttacagATCATCTTTTTGGAAACAATATGTAATGACCAAAATGTTCTCGAGAGAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgggaacttgttgatttgtttttaacacatgggtatttccctttactttacagATCATCTTTTTGGAAACAATATGTAATGACCAAAATGTTCTCGAGAGAAATATGCGCTTGAAAGTTCAACGAAGTCCTGATTATGCGGAACA
                     ttttaac  putative branch site (score: 2)
                                   tatttccctttacttt  putative PPT
            ttgatttgtttttaa  TA-rich tract