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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaatttactgccttttagtttgatacctcttaaatgacctttcacactgattatctgtagatctcttacaaacttgtactgcttacagCCGAAGGTTGTCCAACGCCACTTTCATGATCTTTCACAAAGATATGGGGACACAGTTGTTGTTGATTTGACAGATAAG

Basic information

species Oryza sativa
transcript LOC_Os03g18080.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18080.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G047894_T03 (Zea mays), 3'ss of exon 9
gtaggaatttactgcctttta-gtttgatacctcttaaatgacctttcacactgattatctgtagatctcttacaaacttgtactgcttacagCCGAAGGTTGTCCAACGCCACTTTCATGATCTTTCACAAAGATATGGGGACACAGTTGTTGTTGATTTGACAGATAAG
||| ||||||  | | ||||| | |  |||| |    |||              ||   |||  ||  |||   |||||  | |    ||||||  |||||||| ||||||||||||||||||||||||||| |||||||  | | | |||||| ||| ||||| ||||| 
gtaagaatttgttacattttacgctccatactt----aat--------------atagcctgatgacttctcttaaactgattcca--tacagCATAAGGTTGTTCAACGCCACTTTCATGATCTTTCACAACGATATGGCAAGATAATTGTTGCTGACTTGACTGATAAA

upper sequence: LOC_Os03g18080.2 (Oryza sativa), 3'ss of exon 10
lower sequence: Vv08s0105g00480.t01 (Vitis vinifera), 3'ss of exon 10
gtaggaatttactgcct--tttagtttgatacctcttaaatg-acctttcaca--ctgattatctgtagatctcttacaaacttgtactgcttacagCCGAAGGTTGTCCAACGCCACTTTCATGATCTTTCACAAAGATATGGGGACACAGTTGTTGTTGATTTGACAGATAAG
||| |  |||| | |    | ||||||  ||    || | |     || ||||   |||  |||| |  || | |        |   |||  | ||| |  | |||||  | || || |||||||||||||||||||||||||| ||    || | ||| ||  | || ||||| 
gtatgcttttattccaagatgtagttttctatggtttgagtttgagttgcacaatttgagcatctattaatgtttgtgtttggtcctctgtattcagTCAGAAGTTGTTGAGCGTCATTTTCATGATCTTTCACAAAGATATGGAGAGGTTGTAGCTGTGGACCTAACTGATAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgacctttcacactgattatctgtagatctcttacaaacttgtactgcttacagCCGAAGGTTGTCCAACGCCACTTTCATGATCTTTCACAAAGATATGGGGACACAGTTGTTGTTGATTTGACAGATAAG
                             ctcttac  putative branch site (score: 3)
              tgattat  TA-rich tract