1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtagatttacctctgcattcgtttgatttttctctacatgtggtaatctgtactagcaatcctgtggtaatgaaattgattttcacgtccttgtcactaaatggtcataatatattgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
species | Oryza sativa |
transcript | LOC_Os03g16980.4 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|89186937|gb|CI053340.1|CI053340
genomic: TGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|88987937|gb|CI017999.1|CI017999
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|86253045|gb|CI057970.1|CI057970
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: CTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|89176626|gb|CI111342.1|CI111342
genomic: CTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCCATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|86252444|gb|CI056181.1|CI056181
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|38477586|gb|CF961719.1|CF961719
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: AAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAAGCCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|88297272|gb|CI545362.1|CI545362
genomic: AAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAA-CCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|33813745|gb|CF332759.1|CF332759
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|88981021|gb|CI021148.1|CI021148
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|58684041|gb|CK072728.1|CK072728
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|8859289|gb|AU096607.1|AU096607
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|86257228|gb|CI004046.1|CI004046
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|86425774|gb|CI070871.1|CI070871
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|89186897|gb|CI053300.1|CI053300
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|87034463|gb|CI189087.1|CI189087
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: CGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|86852460|gb|CI320385.1|CI320385
genomic: CGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: CCAATTAATGT-GGAAACCCAG GTGAATTCACCA-GCTGGAACTTGGCTGAGAATGTGAAGGGAGEST: gi|89194251|gb|CI116688.1|CI116688
genomic: CCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTT-GCTGAGAATGTGAA-GGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|86258634|gb|CI064987.1|CI064987
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: ACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|88839265|gb|CI000737.1|CI000737
genomic: ACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|86259156|gb|CI010457.1|CI010457
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: GATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|15853120|gb|BI805916.1|BI805916
genomic: GATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: AANCTGATGAACGGGGACAACACTGGACC-ATTAATTGTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|58607978|gb|CK036011.1|CK036011
genomic: AAGCTGATGAACGGGGACAACACTGGACCAATTAATT-TGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|4968619|gb|AU065523.1|AU065523
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: CGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|88841372|gb|CI005452.1|CI005452
genomic: CGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: CTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|94362093|gb|CI052892.1|CI052892
genomic: CTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: AATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|86543097|gb|CI183303.1|CI183303
genomic: AATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: CGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|87018890|gb|CI256775.1|CI256775
genomic: CGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|58613250|gb|CK040962.1|CK040962
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: CGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|88837252|gb|CI078612.1|CI078612
genomic: CGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: ACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|33680607|gb|CF308846.1|CF308846
genomic: ACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCCGGAACTTGCTGAGAATGTGAAGGAGEST: gi|86901883|gb|CI298530.1|CI298530
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|86254397|gb|CI059124.1|CI059124
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: ATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|87018932|gb|CI256817.1|CI256817
genomic: ATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACTACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|13896507|gb|AU182843.1|AU182843
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: GGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|86250768|gb|CI007631.1|CI007631
genomic: GGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|86420903|gb|CI056892.1|CI056892
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: GGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGEST: gi|89174852|gb|CI111050.1|CI111050
genomic: GGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAG GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttac ... tgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
tgaaattgattttcacgtccttgtcactaaatggtcataatatattgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
cactaaa putative branch site (score: 2)
ataatatattgtgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagatttacctctgcattcgtttgatttttctctacatgtggtaatctgtactagcaatcctgtggtaatgaaattgattttcacgtccttgtcactaaatggtcataatatattgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG