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gtaaccatgtcattgaatatgctatgtgaatcatcttcaatttatgcggtccttataatcttgcttgttttcttttagGCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAATCCTCAAGAAACTAGAGACCATGGATGATGAGAATATCATTGGAGTAGG
species | Oryza sativa |
transcript | LOC_Os03g16010.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAATTTTGGAAAGAAAGATATTCATGGTTTCAGGGTGGAGCTATGTGGAG GCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAAEST: gi|58660858|gb|CK049538.1|CK049538
genomic: AAATTTTGGAAAGAAAGATATTCATGGTTTCAGGGTGGAGCTATGTGGAGgtaaccatgt ... tttcttttagGCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAA
EST: AAATTTTGGAAAGAAAGATATTCATGGTTTCAGGGTGGAGCTATGTGGAG GCTCTTCCATTGTGATGTTCCACGGGGAACTCCCTTAATCCACTAAAGAAAEST: gi|58670134|gb|CK058820.1|CK058820
genomic: AAATTTTGGAAAGAAAGATATTCATGGTTTCAGGGTGGAGCTATGTGGAGgtaaccatgt ... tttcttttagGCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAA
EST: AAATTTTGGAAAGAAAGATATTCATGGTTTCAGGGTGGAGCTATGTGGAG GCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAAEST: gi|87005327|gb|CI285549.1|CI285549
genomic: AAATTTTGGAAAGAAAGATATTCATGGTTTCAGGGTGGAGCTATGTGGAGgtaaccatgt ... tttcttttagGCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAA
EST: AAATTTTGGAAAGAAAGATATTCATGGTTTCAGGGTGGAGCTATGTGGAG GCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAAEST: gi|58598095|gb|CK008623.1|CK008623
genomic: AAATTTTGGAAAGAAAGATATTCATGGTTTCAGGGTGGAGCTATGTGGAGgtaaccatgt ... tttcttttagGCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAA
EST: AAATTTTGGAAAGAAAGATATTCATGGTTTCAGGGTGGAGCTATGTGGAG GCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAAEST: gi|58670343|gb|CK059029.1|CK059029
genomic: AAATTTTGGAAAGAAAGATATTCATGGTTTCAGGGTGGAGCTATGTGGAGgtaaccatgt ... tttcttttagGCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAA
EST: AAATTTTGGAAAGAAAGATATTCATGGTTTCAGGGTGGAGCTATGTGGAG GCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAA
genomic: AAATTTTGGAAAGAAAGATATTCATGGTTTCAGGGTGGAGCTATGTGGAGgtaaccatgt ... tttcttttagGCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAA
atgtgaatcatcttcaatttatgcggtccttataatcttgcttgttttcttttagGCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAATCCTCAAGAAACTAGAGACCATGGATGATGAGAATATCATTGGAGTAGG
tcttgcttgttttctt CT-rich tract
ttcaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccatgtcattgaatatgctatgtgaatcatcttcaatttatgcggtccttataatcttgcttgttttcttttagGCTCTTCCATTGTGATGTTCCACGGGGACCTCCCTTACTCCACTAAAGAAATCCTCAAGAAACTAGAGACCATGGATGATGAGAATATCATTGGAGTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG