1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcttagtttcctagcattatcttttgcaatttgtacatgtggtcttcgttacattgttcttacattatccctgtttatatatattcatgctgttttgtagGCTGTGATGGAGATATATAACATGTACAGAGCTCGGTTATCATCACAGAACACTGTGATCCTCTTTGAGGCATTGCACACTGTTGCTACTCATGCTCATA
species | Oryza sativa |
transcript | LOC_Os03g14260.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAATTGGTGATGCCAAGTGCCGGGCTGCTGTCCAACTCCTATTGATTCAG GCTGTGATGGAGATATATAACATGTACAGAGCTCGGCTATCATCACAGAACEST: gi|58679285|gb|CK067972.1|CK067972
genomic: CAATTGGTGATGCCAAGTGCCGGGCTGCTGTCCAACTCCTATTGATTCAGgtatgcacta ... tgttttgtagGCTGTGATGGAGATATATAACATGTACAGAGCTCGGTTATCATCACAGAAC
EST: CAATTGGTGATGCCAATTGCCGGGCTGCTGTCCAACTCCTATTGATTCAG GCTGTGATGGAGATATATAACATGTACAGAGCTCGGCTATCATCACAGAACEST: gi|58653996|gb|CK042676.1|CK042676
genomic: CAATTGGTGATGCCAAGTGCCGGGCTGCTGTCCAACTCCTATTGATTCAGgtatgcacta ... tgttttgtagGCTGTGATGGAGATATATAACATGTACAGAGCTCGGTTATCATCACAGAAC
EST: CAATTGGTGATGCCAAGTGCCGGGCTGCTGTCCAACTCCTATTGATTCAG GCTGTGATGGAGATATATAACATGTEST: gi|58684141|gb|CK072828.1|CK072828
genomic: CAATTGGTGATGCCAAGTGCCGGGCTGCTGTCCAACTCCTATTGATTCAGgtatgcacta ... tgttttgtagGCTGTGATGGAGATATATAACATGT
EST: CAATTGGTGATGCCAAGTGCCGGGCTGCTGTCCAACTCCTATTGATTCAG GCTGTGATGGAGATATATAACATGTACAGAGCTCGGCTATCATCACAGAAC
genomic: CAATTGGTGATGCCAAGTGCCGGGCTGCTGTCCAACTCCTATTGATTCAGgtatgcacta ... tgttttgtagGCTGTGATGGAGATATATAACATGTACAGAGCTCGGTTATCATCACAGAAC
tcgttacattgttcttacattatccctgtttatatatattcatgctgttttgtagGCTGTGATGGAGATATATAACATGTACAGAGCTCGGTTATCATCACAGAACACTGTGATCCTCTTTGAGGCATTGCACACTGTTGCTACTCATGCTCATA
ttcttac putative branch site (score: 26)
ctgtttt putative PPT
tgtttatatatattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttagtttcctagcattatcttttgcaatttgtacatgtggtcttcgttacattgttcttacattatccctgtttatatatattcatgctgttttgtagGCTGTGATGGAGATATATAACATGTACAGAGCTCGGTTATCATCACAGAACACTGTGATCCTCTTTGAGGCATTGCACACTGTTGCTACTCATGCTCATA
- - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - gtacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatgc