1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtactaaaccggaccatagtaggatgagttctctccttctttgatcatcactaaacatttactatttctgttttcgatatctcaccagCCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAA
species | Oryza sativa |
transcript | LOC_Os03g06410.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTCTTATCATCCAAATCCACTGCTGGAACT CCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAAEST: gi|25803481|gb|CA759450.1|CA759450
genomic: ATTCTTATCATCCAAATCCACTGCTGGAACTgtaagtacta ... atctcaccagCCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAA
EST: CACGCTTGAAGCACAGTACATTCTTATCATCCAAATCCACTGCTGGAACT CCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAAEST: gi|86437095|gb|CI118817.1|CI118817
genomic: CACGCTTGAAGCACAGTACATTCTTATCATCCAAATCCACTGCTGGAACTgtaagtacta ... atctcaccagCCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAA
EST: CACGCTTGAAGCACAGTACATTCTTATCATCCAAATCCACTGCTGGAGCT CCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAA
genomic: CACGCTTGAAGCACAGTACATTCTTATCATCCAAATCCACTGCTGGAACTgtaagtacta ... atctcaccagCCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAA
tccttctttgatcatcactaaacatttactatttctgttttcgatatctcaccagCCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAA
cactaaa putative branch site (score: 33)
tctcacc putative PPT
taaacatttactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtactaaaccggaccatagtaggatgagttctctccttctttgatcatcactaaacatttactatttctgttttcgatatctcaccagCCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA