1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaacttttggttacttttgttatctcccgttatacctttcgcagcaacctggtaatgtatttatgtgatgttcatcctttagGAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA
species | Oryza sativa |
transcript | LOC_Os03g05720.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGATCGATACTTACAGAACTGAAAGGCATTCTTTANCAGTAGAGTAAAG GAATGCCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAEST: gi|29634108|gb|CB639117.1|CB639117
genomic: AAGATCGATACTTACAGAACTGAAAGGCATTCTTTA-CAGTAGAGTAAAGgtaacttttg ... catcctttagGAATGC-AAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAA
EST: CAAGATCGATACTTACAGAACTGAAAGGCATTCTTTACAGTAGAGTAAAG GAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAEST: gi|7332525|gb|AU085871.1|AU085871
genomic: CAAGATCGATACTTACAGAACTGAAAGGCATTCTTTACAGTAGAGTAAAGgtaacttttg ... catcctttagGAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA
EST: CAAGATCGATACTTACAGAACTGAAAGGCATTCTTTACAGTAGAGTAAAG GAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAEST: gi|218478499|gb|FG957068.1|FG957068
genomic: CAAGATCGATACTTACAGAACTGAAAGGCATTCTTTACAGTAGAGTAAAGgtaacttttg ... catcctttagGAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA
EST: CAAGATCGATACTTACAGAACTGAAAGGCATTCTTTACAGTAGAGTAAAG GAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAEST: gi|33803449|gb|CF327599.1|CF327599
genomic: CAAGATCGATACTTACAGAACTGAAAGGCATTCTTTACAGTAGAGTAAAGgtaacttttg ... catcctttagGAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA
EST: CAAGATCGATACTTACAGAACTGAAAGGCATTCTTTACAGTAGAGTAAAG GAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAEST: gi|218482633|gb|FG949654.1|FG949654
genomic: CAAGATCGATACTTACAGAACTGAAAGGCATTCTTTACAGTAGAGTAAAGgtaacttttg ... catcctttagGAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA
EST: CAAGATCGATACTTACAGAACTGAAAGGCATTCTTTACAGTAGAGTAAAG GAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA
genomic: CAAGATCGATACTTACAGAACTGAAAGGCATTCTTTACAGTAGAGTAAAGgtaacttttg ... catcctttagGAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA
cgttatacctttcgcagcaacctggtaatgtatttatgtgatgttcatcctttagGAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA
ttcatccttt CT-rich tract
taatgtatttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttttggttacttttgttatctcccgttatacctttcgcagcaacctggtaatgtatttatgtgatgttcatcctttagGAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC