1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctgcaaaagcaatttctttgtcgtgttattttgaatatgtctagaccaataattgtacttactgagtgcttgttgatagcgttcattttctctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTACCACCTAAACGGGGGATCACACAGTACCATCCAATCCATTAGATCAGTC
species | Oryza sativa |
transcript | LOC_Os03g02850.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTAEST: gi|29659764|gb|CB656039.1|CB656039
genomic: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTAEST: gi|29664030|gb|CB660305.1|CB660305
genomic: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTAEST: gi|88450172|gb|CI541933.1|CI541933
genomic: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: CCATCCAATCCTAAACTTCTTCTACTACTTG TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTAEST: gi|89168924|gb|CI020464.1|CI020464
genomic: CCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: ATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTAEST: gi|88735360|gb|CI758868.1|CI758868
genomic: ATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTAEST: gi|86498594|gb|CI141227.1|CI141227
genomic: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: ATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
genomic: ATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
ccaataattgtacttactgagtgcttgttgatagcgttcattttctctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTACCACCTAAACGGGGGATCACACAGTACCATCCAATCCATTAGATCAGTC
cgttcattttctcttt CT-rich tract
ttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcaaaagcaatttctttgtcgtgttattttgaatatgtctagaccaataattgtacttactgagtgcttgttgatagcgttcattttctctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTACCACCTAAACGGGGGATCACACAGTACCATCCAATCCATTAGATCAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
ctgcaaa
- - - - - - - - - - - - - - - - - - - - - agaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgttg