1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgaatttcgcagtccatgttcatgcatagtacagttcatccactctcttttacatgtttcctggttattactgactcgtttgtttgttgcttctgtaaatatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGTTTGACAGAATAACACCTGTACAGACAAATAGCGAGGCTAGCCTTACCTG
species | Oryza sativa |
transcript | LOC_Os02g57390.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTATTGCTGCAGGAG AAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCNATGGTTAGTEST: gi|29675532|gb|CB671807.1|CB671807
genomic: TTATTGCTGCAGGAGgtgaatttcg ... tatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
EST: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAG AAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGTEST: gi|58688595|gb|CK077282.1|CK077282
genomic: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAGgtgaatttcg ... tatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
EST: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAG AAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGTEST: gi|58592822|gb|CF991130.1|CF991130
genomic: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAGgtgaatttcg ... tatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
EST: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAG AAAGGCGCAGTGGAGTGTCTTCGTCATCTGCGTGAGATTGCAATGGTTAGTEST: gi|58030884|gb|CX728427.1|CX728427
genomic: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAGgtgaatttcg ... tatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
EST: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAG AAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGTEST: gi|27548203|gb|CA766303.2|CA766303
genomic: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAGgtgaatttcg ... tatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
EST: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAG AAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGTEST: gi|29684735|gb|CB681010.1|CB681010
genomic: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAGgtgaatttcg ... tatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
EST: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAG AAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGTEST: gi|86477672|gb|CI120305.1|CI120305
genomic: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAGgtgaatttcg ... tatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
EST: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAG AAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGTEST: gi|89190808|gb|CI392661.1|CI392661
genomic: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAGgtgaatttcg ... tatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
EST: GAAACATATTGTTGCACGGTTTGAGAAGCTTATTGCTGCAGGAG AAAGGCGCAGTGGAGTGTCTTCCTCATCTTCGTGAGATTCCAATGGTTAGTEST: gi|88989521|gb|CI043936.1|CI043936
genomic: GAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAGgtgaatttcg ... tatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
EST: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAG AAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGTEST: gi|27920994|gb|CB096802.1|CB096802
genomic: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAGgtgaatttcg ... tatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
EST: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAG AAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGTEST: gi|86834907|gb|CI345991.1|CI345991
genomic: CTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAGgtgaatttcg ... tatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
EST: TGAGAAGCTTATTGCTGCAGGAG AAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGTEST: gi|88263740|gb|CI366641.1|CI366641
genomic: TGAGAAGCTTATTGCTGCAGGAGgtgaatttcg ... tatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
EST: GAAGCATATTCCTGCAGGAG AAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
genomic: GAAGCTTATTGCTGCAGGAGgtgaatttcg ... tatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT
tgtttcctggttattactgactcgtttgtttgttgcttctgtaaatatatttcagAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGTTTGACAGAATAACACCTGTACAGACAAATAGCGAGGCTAGCCTTACCTG
tactgac putative branch site (score: 29)
ttctgtaaatatattt TA-rich tract