1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgaacttaaataatatcttgtgttggtcaaggcaacctgagtattggattgtctcgtcttttaacagttatgcttcgggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGCCAACCCCATCAATTTTCAACAAAGATCAGATTAATGCATTTTCTGTAG
species | Oryza sativa |
transcript | LOC_Os02g57180.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|4714677|gb|AU055794.1|AU055794
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: ATTACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCCTATTGCAAGG NCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCCGTTEST: gi|86422921|gb|CI060494.1|CI060494
genomic: A-TACGTGAATGGCCACGGTACATCGATGTTCCTCTT-CCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTT-CCGTT
EST: CGATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|88246401|gb|CI246250.1|CI246250
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|86496928|gb|CI139561.1|CI139561
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|29673109|gb|CB669384.1|CB669384
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|88227607|gb|CI227087.1|CI227087
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|86423690|gb|CI062451.1|CI062451
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|88222421|gb|CI222377.1|CI222377
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: GTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|88985739|gb|CI033068.1|CI033068
genomic: GTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|86831290|gb|CI297559.1|CI297559
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|86599963|gb|CI258303.1|CI258303
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|86435376|gb|CI106609.1|CI106609
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CAATACGTGAATGGCCCCGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACCAAGTGCCCTTTCCGTTGEST: gi|11564837|gb|AU165473.1|AU165473
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: TCTTCCTTATTGCAA-G GNTATCGCATCTCCAAGGGAATTGNTGCTAAACAAAGTGCCNTTTCCGTTGEST: gi|88834503|gb|CI077786.1|CI077786
genomic: TCTTCC-TATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|29671359|gb|CB667634.1|CB667634
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|86435209|gb|CI106442.1|CI106442
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|86837459|gb|CI345692.1|CI345692
genomic: CTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: TCTTCCTATTGC-A-G GCTATCGCATCTCCAA-GGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|86508531|gb|CI151164.1|CI151164
genomic: TCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: TGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|86895469|gb|CI331314.1|CI331314
genomic: TGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: ACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|8856604|gb|AU093922.1|AU093922
genomic: ACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG G-TATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGEST: gi|88730417|gb|CI754030.1|CI754030
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
caacctgagtattggattgtctcgtcttttaacagttatgcttcgggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGCCAACCCCATCAATTTTCAACAAAGATCAGATTAATGCATTTTCTGTAG
ttttaac putative branch site (score: 58)
tcttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaacttaaataatatcttgtgttggtcaaggcaacctgagtattggattgtctcgtcttttaacagttatgcttcgggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTGCCAACCCCATCAATTTTCAACAAAGATCAGATTAATGCATTTTCTGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA