1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tggatgggacacatcctagttttacaaatctggaaagggagcttgtagtgttatttagtttgttattccattattatttttaatgtttgttgattggtagGACTTGGAGGATGCGTTGGGTGAGGTGACCTTTGAAGATGGAATTCCAGATATCAAGTTTAGCAGG
species | Oryza sativa |
transcript | LOC_Os02g56200.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTTCCACCAAGAACTAATCTACGCCGAGTGACAATG GACTTGGAGGATGCGTTGGGTGAGGTGACCTTTGAAGATGGAATTCCAGATEST: gi|88432904|gb|CI690761.1|CI690761
genomic: GTTCCACCAAGAACTAATCTACGCCGAGTGACAATGgtaattcatc ... tgattggtagGACTTGGAGGATGCGTTGGGTGAGGTGACCTTTGAAGATGGAATTCCAGAT
EST: CTGCAATGGATGTTGTTCCACCAAGAACTAATCTACGCCGAGTGACAATG GACTTGGAGGATGCGTTGGGTGAGGTGACCTTTGAAGATGGAATTCCAGATEST: gi|86888302|gb|CI301994.1|CI301994
genomic: CTGCAATGGATGTTGTTCCACCAAGAACTAATCTACGCCGAGTGACAATGgtaattcatc ... tgattggtagGACTTGGAGGATGCGTTGGGTGAGGTGACCTTTGAAGATGGAATTCCAGAT
EST: CTGCAATGGATGTTGTTCCACCAAGAACTAATCTACGCCGAGTGACAATG GACTTGGAGGATGCGTTGGGTGAGGTGACCTTTGAAGATGGAATTCCAGATEST: gi|88327786|gb|CI657830.1|CI657830
genomic: CTGCAATGGATGTTGTTCCACCAAGAACTAATCTACGCCGAGTGACAATGgtaattcatc ... tgattggtagGACTTGGAGGATGCGTTGGGTGAGGTGACCTTTGAAGATGGAATTCCAGAT
EST: CTGCAATGGATGTTGTTCCACCAAGAACTAATCTACGCCGAGTGACAATG GACTTGGAGGATGCGTT
genomic: CTGCAATGGATGTTGTTCCACCAAGAACTAATCTACGCCGAGTGACAATGgtaattcatc ... tgattggtagGACTTGGAGGATGCGTT
tagtgttatttagtttgttattccattattatttttaatgtttgttgattggtagGACTTGGAGGATGCGTTGGGTGAGGTGACCTTTGAAGATGGAATTCCAGATATCAAGTTTAGCAGG
ttatttagtttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggatgggacacatcctagttttacaaatctggaaagggagcttgtagtgttatttagtttgttattccattattatttttaatgtttgttgattggtagGACTTGGAGGATGCGTTGGGTGAGGTGACCTTTGAAGATGGAATTCCAGATATCAAGTTTAGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA