1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtacagattttgtatcttgtgatagtattgacatctcttttgagttttgcgatccactctgtgaatttatcaattttttttggggaaaaacttgatcaaaatcataatagtttcatatgttgttttctttcttgcattgaactcttattggtggtagtattcaaagttaatggagaacatgctatttgtttctgcagCTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTTCCAAATGTTGGTGTAGTTGTTGGTATTTCTCAGAGAATGTCCTTCTCGA
species | Oryza sativa |
transcript | LOC_Os02g54500.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAG CTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTTEST: gi|218480869|gb|FG961184.1|FG961184
genomic: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAGgtacagattt ... gtttctgcagCTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTT
EST: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAG CTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTTEST: gi|29686600|gb|CB682875.1|CB682875
genomic: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAGgtacagattt ... gtttctgcagCTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTT
EST: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAG CTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTTEST: gi|58607153|gb|CK035186.1|CK035186
genomic: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAGgtacagattt ... gtttctgcagCTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTT
EST: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAG CTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTTEST: gi|29621606|gb|CB626617.1|CB626617
genomic: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAGgtacagattt ... gtttctgcagCTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTT
EST: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAG CTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTTEST: gi|29673628|gb|CB669903.1|CB669903
genomic: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAGgtacagattt ... gtttctgcagCTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTT
EST: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAG CTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTTEST: gi|2310509|gb|C26664.1|C26664
genomic: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAGgtacagattt ... gtttctgcagCTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTT
EST: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAG CTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTTEST: gi|58612546|gb|CK040258.1|CK040258
genomic: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAGgtacagattt ... gtttctgcagCTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTT
EST: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAG CTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTAT
genomic: GGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAGgtacagattt ... gtttctgcagCTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTAT
tcttattggtggtagtattcaaagttaatggagaacatgctatttgtttctgcagCTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTTCCAAATGTTGGTGTAGTTGTTGGTATTTCTCAGAGAATGTCCTTCTCGA
agttaat putative branch site (score: 14)
tttgtttct putative PPT
tattcaaagttaat TA-rich tract