1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acacttagaaatgatgatatcatgtcttagactattgtcttctgaagttttttcgtgaagcatgtaaagctgacaacctccccattcttttttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGACAGCGGTGACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACAC
species | Oryza sativa |
transcript | LOC_Os02g52420.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTEST: gi|88662360|gb|CI467473.1|CI467473
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTEST: gi|88662872|gb|CI474688.1|CI474688
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTEST: gi|313084050|gb|HO213833.1|HO213833
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTEST: gi|88661931|gb|CI462321.1|CI462321
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTEST: gi|86841002|gb|CI335146.1|CI335146
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTEST: gi|86492814|gb|CI135447.1|CI135447
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: GAAACAATGAATGGGGCCGTATGACATTGAACCCAACATTTACTATAG AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTEST: gi|88662988|gb|CI476281.1|CI476281
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: GAAACAATGAATGGGGCCGTATGACATTGAACCANACATTTACTATAG AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
agttttttcgtgaagcatgtaaagctgacaacctccccattcttttttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGACAGCGGTGACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACAC
agctgac putative branch site (score: 1)
cctccccattcttttt putative PPT
attcttttttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacttagaaatgatgatatcatgtcttagactattgtcttctgaagttttttcgtgaagcatgtaaagctgacaacctccccattcttttttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGACAGCGGTGACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT