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...atcagtagttcttgaatttgtactatctgtttgatattgagcctctatttattaattaatgcctggctaaatcatcttgaactgtcttcttttgcagcagAAATGCACCACGGGGTGGGTTGACTCGGAACCTTCAATAACATACCTCTAACACCAGTCAGCATGAATTTCTTCGATAGTTTCGGATTTCCCTTTGTATT
species | Oryza sativa |
transcript | LOC_Os02g50320.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCTGGAAATTTCAAAGGACCTGGAACCACTTCTCAGGCGCCTCATGGAAGCAGEST: gi|88964298|gb|CI045491.1|CI045491
genomic: CCTGGAAATTTCAAAGGACCTGGAACCACTTCTCAGGCGCCTCATGG-A--AGgtatatctat ... tttgcagc
EST: CCTGGAAATTTCAAAGGACCTGGAACCACTTCTCAGGCGCCTCATGGAAGCAGEST: gi|218485743|gb|FG955661.1|FG955661
genomic: CCTGGAAATTTCAAAGGACCTGGAACCACTTCTCAGGCGCCTCATGG-A--AGgtatatctat ... tttgcagc
EST: CCTGGAAATTTCAAAGGACCTGGAACCACTTCTCAGGCGCCTCATGGAAG CEST: gi|218485743|gb|FG955661.1|FG955661
genomic: CCTGGAAATTTCAAAGGACCTGGAACCACTTCTCAGGCGCCTCATGGAAGgtatatctat ... tttgcagcag-
EST: CCTGGAAATTTCAAAGGACCTGGAACCACTTCTCAGGCGCCTCATGGAAG CEST: gi|44679228|gb|CR292662.1|CR292662
genomic: CCTGGAAATTTCAAAGGACCTGGAACCACTTCTCAGGCGCCTCATGGAAGgtatatctat ... tttgcagcag-
EST: CCTGGAAATTTCAAAGGACCTGGAACCACTTCTCAGGCGCCTCATGGAAGCAGEST: gi|58684724|gb|CK073411.1|CK073411
genomic: CCTGGAAATTTCAAAGGACCTGGAACCACTTCTCAGGCGCCTCATGG-A--AGgtatatctat ... tttgcagc
EST: CCTGGAAATTTCAAAGGACCTGGAACCACTTCTCAGGCGCCTCATGGAAG AAATGCACCACGGGGTGGGTTGACTCGGAACCTTCAATAACATACCTCTAA
genomic: CCTGGAAATTTCAAAGGACCTGGAACCACTTCTCAGGCGCCTCATGGAAGgtatatctat ... tttgcagcagAAATGCACCACGGGGTGGGTTGACTCGGAACCTTCAATAACATACCTCTAA
tatttattaattaatgcctggctaaatcatcttgaactgtcttcttttgcagcagAAATGCACCACGGGGTGGGTTGACTCGGAACCTTCAATAACATACCTCTAACACCAGTCAGCATGAATTTCTTCGATAGTTTCGGATTTCCCTTTGTATT
ctgtcttcttttgc CT-rich tract
attaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcagtagttcttgaatttgtactatctgtttgatattgagcctctatttattaattaatgcctggctaaatcatcttgaactgtcttcttttgcagcagAAATGCACCACGGGGTGGGTTGACTCGGAACCTTCAATAACATACCTCTAACACCAGTCAGCATGAATTTCTTCGATAGTTTCGGATTTCCCTTTGTATT
- - - -gttcttg
- - - - - - - - - - - - - ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaactg