Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatttccttgaacaatatagtacttctagagaaaagtgttgtaccaacacaacttgtgttatcactgttaagtgttgattttactaatcctgtttcttgtgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAAATATAAGATACAAGGGTTTGGTTCTTGAACCGGGAGGTGAGAGGTTCTA

Basic information

species Oryza sativa
transcript LOC_Os02g47850.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47850.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G147450_T03 (Zea mays), 3'ss of exon 11
gtacatttccttgaacaatatagtacttctagagaaaagtgttgtaccaacacaacttgtgttatcactgttaagt-gttgattttactaatcctgtttcttgtgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAAATATAAGATACAAGGGTT-----TGGTTCTTGAACCGGGAGGTGAGAGGTTCTA
|||||||| |||   | | |   | ||  |     |   || ||||  |||  |   ||   | | | ||| |  | | |||| |  | | ||  || | |||||||||||||| || ||||| ||||||||| | ||||||| |||||||||||||||        ||     ||| |||      | ||  | |  |      |    | |     
gtacattttcttttgctagaatcttctgttgatccaccatggtgtag-aacgta--ctgctatcttaatgtgatttagctgatgtctcgattc--gtcttttgtgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGGAGTACTG-GCAAAGGTCAACAATTGTCTTGGTGCTCTCTCGCAGCAAGC----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86423472|gb|CI062233.1|CI062233
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|29626834|gb|CB631845.1|CB631845
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88994375|gb|CI117329.1|CI117329
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGGGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88266357|gb|CI377259.1|CI377259
EST:     TCTTCACTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86513704|gb|CI156337.1|CI156337
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88982941|gb|CI250545.1|CI250545
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88365911|gb|CI545770.1|CI545770
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|14980880|gb|BI305558.1|BI305558
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88958138|gb|CI095657.1|CI095657
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86514359|gb|CI156992.1|CI156992
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88385064|gb|CI561720.1|CI561720
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86254717|gb|CI061028.1|CI061028
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|58661834|gb|CK050514.1|CK050514
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|33799804|gb|CF325768.1|CF325768
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|89192809|gb|CI050107.1|CI050107
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86546604|gb|CI186810.1|CI186810
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|89176143|gb|CI043164.1|CI043164
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|87034488|gb|CI189112.1|CI189112
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86427221|gb|CI072318.1|CI072318
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|89192818|gb|CI050116.1|CI050116
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|38479984|gb|CF964073.1|CF964073
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|33798206|gb|CF324963.1|CF324963
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|25803551|gb|CA759512.1|CA759512
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86880519|gb|CI321005.1|CI321005
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGGAG-TGATGAAGAACAACAGATTGTGAGGCGCA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATA-GAGATGATGAAGAACAACAGATTGTGAGGCGCA
EST: gi|88468047|gb|CI517506.1|CI517506
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|12622631|gb|AU172844.1|AU172844
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88274055|gb|CI394461.1|CI394461
EST:     CCATCCAGAGTCCTCACCCGGGCCGCATGATTCTTACTTGG                         CTTTT-GTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: CCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86523690|gb|CI163896.1|CI163896
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86425823|gb|CI070920.1|CI070920
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86259732|gb|CI065605.1|CI065605
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|218501996|gb|FG959116.1|FG959116
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|89179079|gb|CI043584.1|CI043584
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|89195098|gb|CI051211.1|CI051211
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88268554|gb|CI378489.1|CI378489
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTGTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGGCA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGC-GCA
EST: gi|89173686|gb|CI041579.1|CI041579
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|89173610|gb|CI041503.1|CI041503
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|27547697|gb|CA765722.2|CA765722
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTT-GGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCA
EST: gi|87035241|gb|CI189863.1|CI189863
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86598264|gb|CI354881.1|CI354881
EST:     TCTTCAGTACCATCCAGAGTCCTCACCC-GGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86426311|gb|CI071408.1|CI071408
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88975138|gb|CI023389.1|CI023389
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|87033328|gb|CI187952.1|CI187952
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|87029439|gb|CI250372.1|CI250372
EST:     TTTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|89176288|gb|CI043309.1|CI043309
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|29677260|gb|CB673535.1|CB673535
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88322108|gb|CI537691.1|CI537691
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGNCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86509618|gb|CI152251.1|CI152251
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88985161|gb|CI006815.1|CI006815
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|89198307|gb|CI007367.1|CI007367
EST:     TCTGCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|89175497|gb|CI042518.1|CI042518
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|29658291|gb|CB654566.1|CB654566
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86482764|gb|CI125397.1|CI125397
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86425368|gb|CI070465.1|CI070465
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88232225|gb|CI230683.1|CI230683
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|89185888|gb|CI047757.1|CI047757
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88250235|gb|CI348465.1|CI348465
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTTAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|33799149|gb|CF325432.1|CF325432
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgttatcactgttaagtgttgattttactaatcctgtttcttgtgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAAATATAAGATACAAGGGTTTGGTTCTTGAACCGGGAGGTGAGAGGTTCTA
                           tactaat  putative branch site (score: 1)
                                      tttcttgt  putative PPT
                    ttgattttactaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacatttccttgaacaatatagtacttctagagaaaagtgttgtaccaacacaacttgtgttatcactgttaagtgttgattttactaatcctgtttcttgtgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAAATATAAGATACAAGGGTTTGGTTCTTGAACCGGGAGGTGAGAGGTTCTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG