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gtaatatttttattttttttaaggttacatatttgtcctgtcctatacatttacttcattattacttatctataccctgtttacatcctgcaacacagAGGGAGTCCAAAAAACCAAAAGTAGGAAGATGGTATTTCCCTCGTGGAAGGCTTGACAAACTCATATATACATACCCTTGGAAGAATTTGAATGGGGAAA
species | Oryza sativa |
transcript | LOC_Os02g47410.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGGGCCTATCAGTGCGTACAGAATATTAACTGAAGAGGAGATTGAAACT AGGGAGTCCAAAAAGAC-AAAAGTAGGAAGATGGTATTTCCCTCGTGGAEST: gi|88695819|gb|CI737396.1|CI737396
genomic: ATGGCCCTATCAGTGCGTACAGAATATTAACTGAAGAGGAGATTGAAACTgtaatatttt ... tgcaacacagAGGGAGTCCAAAAA-ACCAAAAGTAGGAAGATGGTATTTCCCTCGTGGA
EST: GTGCGTACAGAATATTAACTGAAGAGGAGATTGAAACT AGGGAGTCCAAAAAACCAAAAGTAGGAAGATGGTATTTCCCTCGTGGAAGGEST: gi|29638402|gb|CB643411.1|CB643411
genomic: GTGCGTACAGAATATTAACTGAAGAGGAGATTGAAACTgtaatatttt ... tgcaacacagAGGGAGTCCAAAAAACCAAAAGTAGGAAGATGGTATTTCCCTCGTGGAAGG
EST: ATGGCCCTATCAGTGCGTACAGAATATTAACTGAAGAGGAGATTGAAACT AGGGAGTCCAAAAAACCAAAAGTAGGAAGATGGTATTTCCCTCGTGGAAGGEST: gi|88721416|gb|CI744715.1|CI744715
genomic: ATGGCCCTATCAGTGCGTACAGAATATTAACTGAAGAGGAGATTGAAACTgtaatatttt ... tgcaacacagAGGGAGTCCAAAAAACCAAAAGTAGGAAGATGGTATTTCCCTCGTGGAAGG
EST: GTGCGTACAGAATATTAACTGAAGAGGAGATTGAAACT AGGGAGTCCAAAAAACCAAAAGTAGGAAGATGGTATTTCCCTCGTGGAAGG
genomic: GTGCGTACAGAATATTAACTGAAGAGGAGATTGAAACTgtaatatttt ... tgcaacacagAGGGAGTCCAAAAAACCAAAAGTAGGAAGATGGTATTTCCCTCGTGGAAGG
tatacatttacttcattattacttatctataccctgtttacatcctgcaacacagAGGGAGTCCAAAAAACCAAAAGTAGGAAGATGGTATTTCCCTCGTGGAAGGCTTGACAAACTCATATATACATACCCTTGGAAGAATTTGAATGGGGAAA
atttacttcattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatttttattttttttaaggttacatatttgtcctgtcctatacatttacttcattattacttatctataccctgtttacatcctgcaacacagAGGGAGTCCAAAAAACCAAAAGTAGGAAGATGGTATTTCCCTCGTGGAAGGCTTGACAAACTCATATATACATACCCTTGGAAGAATTTGAATGGGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA