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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttccacactgttttgcctcacaaccttggtgttcctggtactcttgttatatctatgatctatttgtttcagTTGGAGTAAAAGGAGTTTCGGAGCACGGCATGCCTCGAAGATACTCTACAGGAACTCTATCAACAACCAAACCTCATAGTAATGCATCTCTGAAATCAAG

Basic information

species Oryza sativa
transcript LOC_Os02g47220.3
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58595654|gb|CK006182.1|CK006182
EST:     ACCTACTGTCCGGTCAAAAGCTGGAGTGCTCCCTAAAACGCCTCCATGTG                         TTGGAGTAAAAGGAGTTTCGGAGCACGG
genomic: ACCTACTGTCCGGTCAAAAGCTGGAGTGCTCCCTAAAACGCCTCCATGTGgttagtttcc ... tttgtttcagTTGGAGTAAAAGGAGTTTCGGAGCACGG
EST: gi|58683626|gb|CK072313.1|CK072313
EST:     ACCTACTGTCCGGTCAAAAGCTGGAGTGCTCCCTAAAACGCCTCCATGTG                         TTGGAGTAAAAGGAGTTTCGGAGCACGGCATGCCTCGAAGATACTCTACAG
genomic: ACCTACTGTCCGGTCAAAAGCTGGAGTGCTCCCTAAAACGCCTCCATGTGgttagtttcc ... tttgtttcagTTGGAGTAAAAGGAGTTTCGGAGCACGGCATGCCTCGAAGATACTCTACAG
EST: gi|163918501|gb|EG711431.1|EG711431
EST:     ACCTACTGTCCGGTCAAAAGCTGGAGTGCTCCCTAAAACGCCTCCATGTG                         TTGGAGTAAAAGGAGTTTCGGAGCACGGCATGCCTCGAAGATACTCTACAG
genomic: ACCTACTGTCCGGTCAAAAGCTGGAGTGCTCCCTAAAACGCCTCCATGTGgttagtttcc ... tttgtttcagTTGGAGTAAAAGGAGTTTCGGAGCACGGCATGCCTCGAAGATACTCTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacaaccttggtgttcctggtactcttgttatatctatgatctatttgtttcagTTGGAGTAAAAGGAGTTTCGGAGCACGGCATGCCTCGAAGATACTCTACAGGAACTCTATCAACAACCAAACCTCATAGTAATGCATCTCTGAAATCAAG
 gcctcac  putative branch site (score: 3)
                                             tttgtttc  putative PPT
                             ttatatctat  TA-rich tract