1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttttgcgggacaatttagattatcttgctggttaatgtacaatataaaactttcctgcactgtattgaatcattctcttgaccgccaggttgacctgaagGTGCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG
species | Oryza sativa |
transcript | LOC_Os02g40830.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCATGAAATGTGATGTGATAGCAAGTGGAATAGTGAATGCAGCAAAACAGGTTGACCTGAAGEST: gi|86487713|gb|CI130346.1|CI130346
genomic: TCATGAAATGTGATGTGATAGCAAGTGGAATAGTGAATGCAGC--AA-A-----A-C---AGgtttgtcttc ...
EST: TCATGAAATGTGATGTGATAGCAAGTGGAATAGTGAATGCAGCAAAACAG GTGCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGEST: gi|58689592|gb|CK078279.1|CK078279
genomic: TCATGAAATGTGATGTGATAGCAAGTGGAATAGTGAATGCAGCAAAACAGgtttgtcttc ... tgacctgaagGTGCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGG
EST: TCATGAAATGTGATGTGATAGCAAGTGGAATAGTGAATGCAGCAAAACAGGTTGACCTGAAGEST: gi|29662329|gb|CB658604.1|CB658604
genomic: TCATGAAATGTGATGTGATAGCAAGTGGAATAGTGAATGCAGC--AA-A-----A-C---AGgtttgtcttc ...
EST: TCATGAAATGTGATGTGATAGCAAGTGGAATAGTGAATGCAGCAAAACAGGTTGACCTGAAG
genomic: TCATGAAATGTGATGTGATAGCAAGTGGAATAGTGAATGCAGC--AA-A-----A-C---AGgtttgtcttc ...
aaaactttcctgcactgtattgaatcattctcttgaccgccaggttgacctgaagGTGCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG
tattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgcgggacaatttagattatcttgctggttaatgtacaatataaaactttcctgcactgtattgaatcattctcttgaccgccaggttgacctgaagGTGCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - -cttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - tcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtattg