1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cctttatatttaagaacctaactcaatgaagccctcttgcatttgcactccagatacttaagaatctaactcgatggagcatttttcttttgcacttcagATACTTAAGAATTTGACAGGATTGAGGTCCCCTTGGAATTGCCCTCATGGGAGGCCAACAATGCGCCATCTAGCAGATCTCCATGCTATAAAAACTGAAG
species | Oryza sativa |
transcript | LOC_Os02g37920.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAATGTCTACCATGATAGGTGATCCATTGACAAAAACTGAGATGAAGAAG ATACTTAAGAATTTGACAGGATTGAGGTCCCCTTGGAATTGCCCTCATGGGEST: gi|86867974|gb|CI331798.1|CI331798
genomic: GAATGTCTACCATGATAGGTGATCCATTGACAAAAACTGAGATGAAGAAGgtaaccacag ... tgcacttcagATACTTAAGAATTTGACAGGATTGAGGTCCCCTTGGAATTGCCCTCATGGG
EST: GAATGTCTACCATGATAGGTGATCCATTGACAAAAACTGAGATGAAGAAG ATACTTAAGAATTTGACACGGATTGAGGTCCCCTTGGAATTGCCCTCATGG
genomic: GAATGTCTACCATGATAGGTGATCCATTGACAAAAACTGAGATGAAGAAGgtaaccacag ... tgcacttcagATACTTAAGAATTTGACA-GGATTGAGGTCCCCTTGGAATTGCCCTCATGG
cactccagatacttaagaatctaactcgatggagcatttttcttttgcacttcagATACTTAAGAATTTGACAGGATTGAGGTCCCCTTGGAATTGCCCTCATGGGAGGCCAACAATGCGCCATCTAGCAGATCTCCATGCTATAAAAACTGAAG
atctaac putative branch site (score: 10)
tttttcttttgcactt putative PPT
atttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctttatatttaagaacctaactcaatgaagccctcttgcatttgcactccagatacttaagaatctaactcgatggagcatttttcttttgcacttcagATACTTAAGAATTTGACAGGATTGAGGTCCCCTTGGAATTGCCCTCATGGGAGGCCAACAATGCGCCATCTAGCAGATCTCCATGCTATAAAAACTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - aacctaa
- - - - - - - - - - -ctcaatg
- - - - - - - - - - - - - - - - - tcttgca
- - - - - - - - - - - - - - - - - - - - - -tgcactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcgatg