1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtgtgttgaactttctgattactatttcaaaattgatgtaaactatgtgcttacctctagtctagcttgtagttcccacataagttttttttcttgaatgcagAGGTAGCCTATACAGGATTTTGCACAAGCATGGTGCAAGGGAAAATCTAGATGAGAAGCGGCGATTGAGTATGGCTTTTGACGTG
species | Oryza sativa |
transcript | LOC_Os02g32610.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCTGTTACTCAGCCACCAAAACTTTCGATTGTGACAGAATATCTATCAAG AGGTAGCCTATACAGGATTTTGCACAAGCATGGTGCAAGGGAAAATCTAGAEST: gi|33675051|gb|CF303290.1|CF303290
genomic: GCTGTTACTCAGCCACCAAAACTTTCGATTGTGACAGAATATCTATCAAGgtgtgttgaa ... ttgaatgcagAGGTAGCCTATACAGGATTTTGCACAAGCATGGTGCAAGGGAAAATCTAGA
EST: GCTGTTACTCAGCCACCAAAACTTTCGATTGTGACAGAATATCTATCAAG AGGTAGCCTATACAGGATTTTGCACAAGCATGGTGCAAGGGAAAATCTAGAEST: gi|29665412|gb|CB661687.1|CB661687
genomic: GCTGTTACTCAGCCACCAAAACTTTCGATTGTGACAGAATATCTATCAAGgtgtgttgaa ... ttgaatgcagAGGTAGCCTATACAGGATTTTGCACAAGCATGGTGCAAGGGAAAATCTAGA
EST: GCTGTTACTCAGCCACCAAAACTTTCGATTGTGACAGAATATCTATCAAG AGGTAGCCTATACAGGATTTTGCACAAGCATGGTGCAAGGGAAAATCTAGAEST: gi|29664339|gb|CB660614.1|CB660614
genomic: GCTGTTACTCAGCCACCAAAACTTTCGATTGTGACAGAATATCTATCAAGgtgtgttgaa ... ttgaatgcagAGGTAGCCTATACAGGATTTTGCACAAGCATGGTGCAAGGGAAAATCTAGA
EST: GCTGTTACTCAGCCACCAAAACTTTCGATTGTGACAGAATATCTATCAAG AGGTAGCCTATACAGGATTTTGCACAAGCATGGTGCAAGGGAAAATCTAGAEST: gi|58595275|gb|CF993583.1|CF993583
genomic: GCTGTTACTCAGCCACCAAAACTTTCGATTGTGACAGAATATCTATCAAGgtgtgttgaa ... ttgaatgcagAGGTAGCCTATACAGGATTTTGCACAAGCATGGTGCAAGGGAAAATCTAGA
EST: CTGTTACTCAGCCACCAAAACTTTCGATTGTGACGAGGATATCTATCAAG AGGTAGCCTATACAGGATTTTGCACAAGCATGGTGCAAGGGAAAATCTAGA
genomic: CTGTTACTCAGCCACCAAAACTTTCGATTGTGAC-AGAATATCTATCAAGgtgtgttgaa ... ttgaatgcagAGGTAGCCTATACAGGATTTTGCACAAGCATGGTGCAAGGGAAAATCTAGA
gcttacctctagtctagcttgtagttcccacataagttttttttcttgaatgcagAGGTAGCCTATACAGGATTTTGCACAAGCATGGTGCAAGGGAAAATCTAGATGAGAAGCGGCGATTGAGTATGGCTTTTGACGTG
tgcttac putative branch site (score: 11)
ttttttttctt putative PPT
ataagttttttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttgaactttctgattactatttcaaaattgatgtaaactatgtgcttacctctagtctagcttgtagttcccacataagttttttttcttgaatgcagAGGTAGCCTATACAGGATTTTGCACAAGCATGGTGCAAGGGAAAATCTAGATGAGAAGCGGCGATTGAGTATGGCTTTTGACGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC