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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttctgtttgtaaatattatcgtaagcatgagaatcttgtgttgctcatgataaactaagggttttggattgccttcattagGTATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAG

Basic information

species Oryza sativa
transcript LOC_Os02g31874.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g31874.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G477146_T01 (Zea mays), 3'ss of exon 10
gtgagtttctgtttgtaaatattatcgtaagcatgagaatcttgtgttgc-tcatgataaactaagggttttggattgccttcattagGTATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAG
|| |||| |||||||| | || |    |||  | | ||||| ||  || | |||| ||||||  | | || ||  || |     | ||||||||||||| || |||||| | |||||||| || |||||||||| ||||||| | || || ||||| || |||||||| ||||||||||
gtaagttcctgtttgtga-taatcggataatgaagtgaatcatgcatttcctcattataaaccgatgattctgtttttctgctgtcagGTATTTGATACGCTCAGGATAATTATGTTTGTGTTAGGCATGACATTTGTCTTTGTTGGGATTTCCTTGCTAGCACCCGATGACAGTAAAG

upper sequence: LOC_Os02g31874.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G144254_T06 (Zea mays), 3'ss of exon 9
gtgagtttctgtttgtaaatattatcgtaagcatgag--aatcttgtgttgctca-tgataaactaagggttttggattgccttcattagGTATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAG
||  ||| ||||||| | ||| |    |||  |  ||  |||| ||  ||||| | | | |||||  |  || ||  || |||   | ||||||||||||| || |||||| | ||| |||||||||||||||||| ||||||| | || |||||||| || |||||||| |||| |||||
gtaggttcctgtttg-agataatgggataatgaaaagtgaatcatgcattgcttaattagaaactgggtattctgtttttcctctgtcagGTATTTGATACGCTCAGGATAATTATGGTTGTATTGGGCATGACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG

upper sequence: LOC_Os02g31874.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G144254_T03 (Zea mays), 3'ss of exon 7
gtgagtttctgtttgtaaatattatcgtaagcatgag--aatcttgtgttgctca-tgataaactaagggttttggattgccttcattagGTATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAG---------
||  ||| ||||||| | ||| |    |||  |  ||  |||| ||  ||||| | | | |||||  |  || ||  || |||   | ||||||||||||| || |||||| | ||| |||||||||||||||||| ||||||| | || |||||||| || |||||||| |||| |||||         
gtaggttcctgtttg-agataatgggataatgaaaagtgaatcatgcattgcttaattagaaactgggtattctgtttttcctctgtcagGTATTTGATACGCTCAGGATAATTATGGTTGTATTGGGCATGACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGGTTTGTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgagaatcttgtgttgctcatgataaactaagggttttggattgccttcattagGTATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAG
                                          ttgccttc  CT-rich tract
                       ataaactaa  TA-rich tract