1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcttgtgcagttatctttgcatactatgtatgtgattcctattaatatcatagttttcctgatgaagtgcctaaaccagttctgtttaatgtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAG
species | Oryza sativa |
transcript | LOC_Os02g30730.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCTCTCAGCTAAACACCATACCTTGTTTTAAGTGGCAATGCCAAATCAGG TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGEST: gi|58679117|gb|CK067804.1|CK067804
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGG TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGEST: gi|38477088|gb|CF961221.1|CF961221
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: TGTTTTAAGTGGCAATGCAAAATCAGG TCAAACGACGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGEST: gi|58668329|gb|CK057015.1|CK057015
genomic: TGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGA-GCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTG
EST: TTAAGTGGCAATGCAAAATCAGG TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGEST: gi|4716788|gb|AU057904.1|AU057904
genomic: TTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGG TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGEST: gi|44678577|gb|CR292011.1|CR292011
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: GCTCTCAGCAAAACACCATACGTTGTTTTAAGTGCCAATGCAAAATCAGG CCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGEST: gi|86478715|gb|CI121348.1|CI121348
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGG TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGEST: gi|29633765|gb|CB638774.1|CB638774
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: TAAGTGGCAATGCAAAATCAGG TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGEST: gi|88985302|gb|CI006956.1|CI006956
genomic: TAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: TTAAGTGGCAATGCAAAATCAGG TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGEST: gi|27547935|gb|CA765873.2|CA765873
genomic: TTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGG TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGEST: gi|29632346|gb|CB637355.1|CB637355
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGG TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGEST: gi|58694197|gb|CK082884.1|CK082884
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGG TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
tatcatagttttcctgatgaagtgcctaaaccagttctgtttaatgtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAG
tttaatgtgatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgtgcagttatctttgcatactatgtatgtgattcctattaatatcatagttttcctgatgaagtgcctaaaccagttctgtttaatgtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA