1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aggtgatttttcgatggtactaggcgaattggtgtttctttgtgttctttgatgaccctttcaccttctgaaggtctcatactctcgtgtcaccatacagGTCCTCACTATTGATGGAGGAATGGTAATGTAAAAAGGCTTGAGCGGTCACTGGCAATCTTCCCGGCAGCTGTAGTAGTAAAATCATCATGTAATGAACA
species | Oryza sativa |
transcript | LOC_Os02g30060.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGTTGAGTTCTTAGCACTTAGCCCTGGTGGAAGCTACATCACTGGGCAG GTCCTCACTATTGATGGAGGAATGGTAATGTAAAAAGGCTTGAGCGGTCACEST: gi|88452075|gb|CI552783.1|CI552783
genomic: TGGTTGAGTTCTTAGCACTTAGCCCTGGTGGAAGCTACATCACTGGGCAGgtagtgagaa ... caccatacagGTCCTCACTATTGATGGAGGAATGGTAATGTAAAAAGGCTTGAGCGGTCAC
EST: GGTTGAGTTCTTAGCACTTAGCCCCTGGTGGAAGCTACATCACTGGGCAG GTCCTCACTATTGATGGAGGAATGGTAATGTAAAAAGGCTTGAGCGGTCAC
genomic: GGTTGAGTTCTTAGCACTTAG-CCCTGGTGGAAGCTACATCACTGGGCAGgtagtgagaa ... caccatacagGTCCTCACTATTGATGGAGGAATGGTAATGTAAAAAGGCTTGAGCGGTCAC
tctttgatgaccctttcaccttctgaaggtctcatactctcgtgtcaccatacagGTCCTCACTATTGATGGAGGAATGGTAATGTAAAAAGGCTTGAGCGGTCACTGGCAATCTTCCCGGCAGCTGTAGTAGTAAAATCATCATGTAATGAACA
ctttgat putative branch site (score: 5)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtgatttttcgatggtactaggcgaattggtgtttctttgtgttctttgatgaccctttcaccttctgaaggtctcatactctcgtgtcaccatacagGTCCTCACTATTGATGGAGGAATGGTAATGTAAAAAGGCTTGAGCGGTCACTGGCAATCTTCCCGGCAGCTGTAGTAGTAAAATCATCATGTAATGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - tggtact
- - - - - - - - - - - - - - -tggtgtt
- - - - - - - - - - - - - - - - - - - -ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - ttgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catactc