1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tattacatgatgcaattccatgcagaaatcacatgttccttacatcgataacattatgttatttatgcataaaaaagtttgcgctggatcattttcccagGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAAGAGGAAGGAAACGAAATTGTACGGCAACATGATTTCGAAGCTAAGCAAG
species | Oryza sativa |
transcript | LOC_Os02g28980.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAG GGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAAEST: gi|218501934|gb|FG968124.1|FG968124
genomic: TTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAGgtaataccct ... attttcccagGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAA
EST: TTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAG GGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCACAAEST: gi|88964074|gb|CI032991.1|CI032991
genomic: TTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAGgtaataccct ... attttcccagGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAA
EST: TAGAAATAGATCCAGACAACAG GGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGNTCAAGGAGCAGAAEST: gi|29644965|gb|CB649972.1|CB649972
genomic: TAGAAATAGATCCAGACAACAGgtaataccct ... attttcccagGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAA
EST: TTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAG GGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAAEST: gi|86831259|gb|CI297528.1|CI297528
genomic: TTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAGgtaataccct ... attttcccagGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAA
EST: TTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAG GGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAAEST: gi|58677214|gb|CK065901.1|CK065901
genomic: TTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAGgtaataccct ... attttcccagGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAA
EST: TTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAG GGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAA
genomic: TTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAGgtaataccct ... attttcccagGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAA
cgataacattatgttatttatgcataaaaaagtttgcgctggatcattttcccagGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAAGAGGAAGGAAACGAAATTGTACGGCAACATGATTTCGAAGCTAAGCAAG
cgataac putative branch site (score: 28)
tcattttccc putative PPT
attatgttatttatgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattacatgatgcaattccatgcagaaatcacatgttccttacatcgataacattatgttatttatgcataaaaaagtttgcgctggatcattttcccagGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAAGAGGAAGGAAACGAAATTGTACGGCAACATGATTTCGAAGCTAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - -tgatgca
- - - - - - - - tccatgc
- - - - - - - - - - - - - - - -catgttc
- - - - - - - - - - - - - - - - - - - cttacat
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgctg