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...cagtgttcttattaatttcagttgtgttatctgcttacacttgatgatttttaacacaagttcttcaactgatgttatggtactgtcctactcttgtcagACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTGGTCAAGCAAAGAAATCCTCAGAAAGTCTACCTGCAGATTCTTCTTTGTC
species | Oryza sativa |
transcript | LOC_Os02g27950.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG ACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTGEST: gi|33658414|gb|CF281027.1|CF281027
genomic: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGgttggttata ... ctcttgtcagACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTG
EST: ATATCCTGAAGGGTGGCAGGTCATTCGATTTCTGAA- ATTTGGGAAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCEST: gi|58674525|gb|CK063212.1|CK063212
genomic: ATATC-TGAAGG-TGGCAGGTCAT-CGATTTCTGAAGgttggttata ... ctcttgtcagACTTGG-AA-GTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATC
EST: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG ACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTGEST: gi|58677564|gb|CK066251.1|CK066251
genomic: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGgttggttata ... ctcttgtcagACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTG
EST: ATATCTGAAGGTGGCAGGTCGATCGATTTCTGAAG ACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTGEST: gi|218478232|gb|FG962363.1|FG962363
genomic: ATATCTGAAGGTGGCAGGTC-ATCGATTTCTGAAGgttggttata ... ctcttgtcagACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTG
EST: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG ACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTGEST: gi|117210416|gb|CT857519.1|CT857519
genomic: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGgttggttata ... ctcttgtcagACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTG
EST: TGAGAATATTATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG ACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTGEST: gi|58689025|gb|CK077712.1|CK077712
genomic: TGAGAATATTATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGgttggttata ... ctcttgtcagACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTG
EST: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG ACTTGGAAGTGCCATEST: gi|218494729|gb|FG965196.1|FG965196
genomic: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGgttggttata ... ctcttgtcagACTTGGAAGTGCCAT
EST: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG ACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTGEST: gi|33675902|gb|CF304141.1|CF304141
genomic: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGgttggttata ... ctcttgtcagACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTG
EST: ATATCTGANAG-TGGCAGGTCATCGATTTCTGAAG ACTTGGAAGTGCCATCTTTCA-GCTCGCACGCTTCTGAGCCTTCATCATCTEST: gi|33658429|gb|CF281042.1|CF281042
genomic: ATATCTGA-AGGTGGCAGGTCATCGATTTCTGAAGgttggttata ... ctcttgtcagACTTGGAAGTGCCATCTT-CAAGCTCGCACGCTTCTGAGCCTTCATCATCT
EST: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG ACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTGEST: gi|218504451|gb|FG953021.1|FG953021
genomic: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGgttggttata ... ctcttgtcagACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTG
EST: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG ACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTGEST: gi|218498152|gb|FG965352.1|FG965352
genomic: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGgttggttata ... ctcttgtcagACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTG
EST: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG ACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTG
genomic: ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGgttggttata ... ctcttgtcagACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTG
gatttttaacacaagttcttcaactgatgttatggtactgtcctactcttgtcagACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTGGTCAAGCAAAGAAATCCTCAGAAAGTCTACCTGCAGATTCTTCTTTGTC
tcctactctt CT-rich tract
atgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtgttcttattaatttcagttgtgttatctgcttacacttgatgatttttaacacaagttcttcaactgatgttatggtactgtcctactcttgtcagACTTGGAAGTGCCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTGGTCAAGCAAAGAAATCCTCAGAAAGTCTACCTGCAGATTCTTCTTTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- -tgttctt
- - - - - - - - - - -ttgtgtt
- - - - - - - - - - - - - - - ctgctta
- - - - - - - - - - - - - - - - - - - -cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - -acacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtactg