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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaatatttgaattactttttagaatgacattggttgttcttcaacattgtgttttgatattactgacttaataatgacattgtttactctacttaatgcagGGTGTAAGTCGTGAAAACAAGTTGCGTTTGCTGATGATCTATGCAGCAATCAACCCAGACAAGTTCGAAAGTGACAAGGGTGAAAAATTGATGCAG

Basic information

species Oryza sativa
transcript LOC_Os02g25580.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g25580.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G052880_T01 (Zea mays), 3'ss of exon 14
gtatttaatatttgaattactttttagaatgacattggttgttcttcaacattgtgttttgatattactgacttaataatgacattgtttactctacttaatgcagGGTGTAAGTCGTGAAAACAAGTTGCGTTTGCTGATGATCTATGCAGCAATCAACCCAGACAAGTTCGAAAGTGACAAGGGTGAAAAATTGATGCAG
             | | |  |  || ||   ||||||||||       ||||||  |||    |      | ||  || | | ||| | |     ||| |||||||| ||||||||||||||| || || || ||||||||||| ||||||||| | |||||||| ||||| ||||| |||||||||| |||||| ||||||
-------------gtaattttagtttgacctacattggttgac-----acattggctttcaccac-----attttgtattcagattttctg----actcaatgcagGTTGTAAGTCGTGAAAATAAATTACGCTTGCTGATGATTTATGCAGCACTTAACCCAGAGAAGTTTGAAAGCGACAAGGGTGCAAAATTAATGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29626795|gb|CB631806.1|CB631806
EST:     TTGGTGATGCTGGAACTAAAGAATTAATCAATTTTTTGAGGACACAATTG                         GGTGTAAGTCGTGAAAACAAGTTGCGTTTGCTGATGATCTATGCAGCAATC
genomic: TTGGTGATGCTGGAACTAAAGAATTAATCAATTTTTTGAGGACACAATTGgtatttaata ... cttaatgcagGGTGTAAGTCGTGAAAACAAGTTGCGTTTGCTGATGATCTATGCAGCAATC
EST: gi|218485563|gb|FG949368.1|FG949368
EST:     TTGGTGATGCTGGAACTAAAGAATTAATCAATTTTTTGAGGACACAATTG                         GGTGTAAGTCGTGAAAACAAGTTGCGTTTGCTGATGATCTATGCAGCAATC
genomic: TTGGTGATGCTGGAACTAAAGAATTAATCAATTTTTTGAGGACACAATTGgtatttaata ... cttaatgcagGGTGTAAGTCGTGAAAACAAGTTGCGTTTGCTGATGATCTATGCAGCAATC
EST: gi|66914840|gb|CX101688.1|CX101688
EST:     TTGGTGATGCTGGAACTAAAGAATTAATCAATTTTTTGAGGACACAATTG                         GGTGTAAGTCGTGAAAACAAGTTGCGTTTGCTGATGATCTATGCAGCAATC
genomic: TTGGTGATGCTGGAACTAAAGAATTAATCAATTTTTTGAGGACACAATTGgtatttaata ... cttaatgcagGGTGTAAGTCGTGAAAACAAGTTGCGTTTGCTGATGATCTATGCAGCAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgttttgatattactgacttaataatgacattgtttactctacttaatgcagGGTGTAAGTCGTGAAAACAAGTTGCGTTTGCTGATGATCTATGCAGCAATCAACCCAGACAAGTTCGAAAGTGACAAGGGTGAAAAATTGATGCAG
                                        ctctactt  CT-rich tract
                     ttaataatgacatt  TA-rich tract