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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgcccataggtgactttctatgccaatgtcaataagctatattcagcttttgttgttctaattttggttctcattcatatattactttggttgtttacagAAGAGGAGTCGGGATGACCTGATTCAGCTGTTCCCGTTGTTACGGTGCTTCAAAGTACACAGCTAGTTGACCTGAATTTCTGTTAAGTTGTTTATTCTAC

Basic information

species Oryza sativa
transcript LOC_Os02g17990.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29668215|gb|CB664490.1|CB664490
EST:     GCTCACGTAGTCTCACAACTCTTGATGTAAATGGCTGTATTGGTATTAAG                         AAGAGGAGTCGGGATGACCTGATTCAGCTGTTCCCGTTGTTACGGTGCTTC
genomic: GCTCACGTAGTCTCACAACTCTTGATGTAAATGGCTGTATTGGTATTAAGgtgaggattc ... ttgtttacagAAGAGGAGTCGGGATGACCTGATTCAGCTGTTCCCGTTGTTACGGTGCTTC
EST: gi|29668175|gb|CB664450.1|CB664450
EST:     GCTCACGTAGTCTCACAACTCTTGATGTAAATGGCTGTATTGGTATTAAG                         AAGAGGAGTCGGGATGACCTGATTCAGCTGTTCCCGTTGTTACGGTGCTTC
genomic: GCTCACGTAGTCTCACAACTCTTGATGTAAATGGCTGTATTGGTATTAAGgtgaggattc ... ttgtttacagAAGAGGAGTCGGGATGACCTGATTCAGCTGTTCCCGTTGTTACGGTGCTTC
EST: gi|88238513|gb|CI238362.1|CI238362
EST:     GCTCACGTAGTCTCACAACTCTTGATGTAAATGGCTGTATTGGTATTAAG                         AAGAGGAGTCGGGATGACCTGATTCAGCTGTTCCCGTTGTTACGGTGCTTC
genomic: GCTCACGTAGTCTCACAACTCTTGATGTAAATGGCTGTATTGGTATTAAGgtgaggattc ... ttgtttacagAAGAGGAGTCGGGATGACCTGATTCAGCTGTTCCCGTTGTTACGGTGCTTC
EST: gi|89196922|gb|CI402676.1|CI402676
EST:     GCTCACGTAGTCTCACAACTCTTGATGTAGATGGCTGTATTGGTATTAAG                         AAGAGGAGTCGGGATGACCTGATTCAGCTGTTCCCGTTGTTACGGTGCTTC
genomic: GCTCACGTAGTCTCACAACTCTTGATGTAAATGGCTGTATTGGTATTAAGgtgaggattc ... ttgtttacagAAGAGGAGTCGGGATGACCTGATTCAGCTGTTCCCGTTGTTACGGTGCTTC
EST: gi|88908325|gb|CI090918.1|CI090918
EST:     CTCACAACTCTTGATGTAAAGGGCTGTATTGGTATTAAG                         AAGAGGAGTCGGGATGACCTGATTCAGCTGTTCCCGTTGTTACGGTGCTTC
genomic: CTCACAACTCTTGATGTAAATGGCTGTATTGGTATTAAGgtgaggattc ... ttgtttacagAAGAGGAGTCGGGATGACCTGATTCAGCTGTTCCCGTTGTTACGGTGCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttttgttgttctaattttggttctcattcatatattactttggttgtttacagAAGAGGAGTCGGGATGACCTGATTCAGCTGTTCCCGTTGTTACGGTGCTTCAAAGTACACAGCTAGTTGACCTGAATTTCTGTTAAGTTGTTTATTCTAC
          ttctaat  putative branch site (score: 2)
 attcatatattacttt  TA-rich tract