1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctgccattctctgcccttgaatttatatgatcagtgttttcgaattcataccagtgtaacttcatgcaatatgctgattaatcaccattacaatttacagCTCGAAGCATGTGCACATTCATTCTTTGATGAATTGCGAGAACCCCACGCAAGGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAG
species | Oryza sativa |
transcript | LOC_Os02g14130.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGCATCACGTCTTCTCCAGTATTCACCAAATCTACGATGCACTGCC CTCGAAGCATGTGCACATTCATTCTTTGATGAATTGCGAGAACCCCACGCAEST: gi|29660511|gb|CB656786.1|CB656786
genomic: ACCTTGCATCACGTCTTCTCCAGTATGCACCAAATCTACGATGCACTGCCgtgagttttc ... caatttacagCTCGAAGCATGTGCACATTCATTCTTTGATGAATTGCGAGAACCCCACGCA
EST: ACCTTGCATCACGTCTTCTCCAGTATGCACCAAATCTACGATGCACTGCC CTCGAAGCATGTGCACATTCATTCTTTGATGAATTGCGAGAACCCCACGCAEST: gi|29665852|gb|CB662127.1|CB662127
genomic: ACCTTGCATCACGTCTTCTCCAGTATGCACCAAATCTACGATGCACTGCCgtgagttttc ... caatttacagCTCGAAGCATGTGCACATTCATTCTTTGATGAATTGCGAGAACCCCACGCA
EST: ACCTTGCATCACGTCTTCTCCAGTATGCACCAAATCTACGATGCACTGCC CTCGAAGCATGTGCACATTCATTCTTTGATGAATTGCGAGAACCCCACGCAEST: gi|58677693|gb|CK066380.1|CK066380
genomic: ACCTTGCATCACGTCTTCTCCAGTATGCACCAAATCTACGATGCACTGCCgtgagttttc ... caatttacagCTCGAAGCATGTGCACATTCATTCTTTGATGAATTGCGAGAACCCCACGCA
EST: ACCTTGCATCACGTCTTCTCCAGTATTCACCAAATCTACGATGCACTGCC CTCGAAGCATGTGCACATTCATTCTTTGATGAATTGCGAGAACCCCACGCA
genomic: ACCTTGCATCACGTCTTCTCCAGTATGCACCAAATCTACGATGCACTGCCgtgagttttc ... caatttacagCTCGAAGCATGTGCACATTCATTCTTTGATGAATTGCGAGAACCCCACGCA
tcataccagtgtaacttcatgcaatatgctgattaatcaccattacaatttacagCTCGAAGCATGTGCACATTCATTCTTTGATGAATTGCGAGAACCCCACGCAAGGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAG
gattaat putative branch site (score: 82)
attacaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgccattctctgcccttgaatttatatgatcagtgttttcgaattcataccagtgtaacttcatgcaatatgctgattaatcaccattacaatttacagCTCGAAGCATGTGCACATTCATTCTTTGATGAATTGCGAGAACCCCACGCAAGGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- gccattc
- - - - - -tgccctt
- - - - - - - - - - - - - - - - - - - - - - - catacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat