1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacaatcttttgagtgcatgaacaaaaaaatatatccatttcaatcgtccttgatcatgttttagacaagttcttactttattgttttgtgggcagGGTCTTTCCTTTCAATCTCCAAACAGTGGAACTCAGATGATCATTTATCACTACAGTTCCCTATTACACTAAGGACTGAAGCAATAAAAG
species | Oryza sativa |
transcript | LOC_Os02g10190.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGGCGCAAAAGCAACTCTAAATGACAACGATTTAGGATTAATGTCTCCAG GGGTCTTTCCTTTCAATCTCCACACAGTGGAACTCAGATGATCATTTATCAEST: gi|27576074|gb|CA998768.1|CA998768
genomic: GG-CGCAAAAGCAACTCTAAATGACAACGATTTAGGATTAATGTCTCCAGgtacaatctt ... ttgtgggcagGG-TCTTTCCTTTCAATCTCCAAACAGTGGAACTCAGATGATCATTTATCA
EST: TTTAGGATTAATGTCTCCAG GGTCTTTCCTTTCAATCTCCATACACTGGAACTCAGATGATCATTTATCACEST: gi|38475131|gb|CF959264.1|CF959264
genomic: TTTAGGATTAATGTCTCCAGgtacaatctt ... ttgtgggcagGGTCTTTCCTTTCAATCTCCAAACAGTGGAACTCAGATGATCATTTATCAC
EST: GGCGCAAAAGCAACTCTAAATGACAACGATTTAGGATTAATGTCTCCA- GGTCTTTCCTTTCAATCTCCAAACAGTGGAACTCAGATGATCATTTATCAC
genomic: GGCGCAAAAGCAACTCTAAATGACAACGATTTAGGATTAATGTCTCCAGgtacaatctt ... ttgtgggcagGGTCTTTCCTTTCAATCTCCAAACAGTGGAACTCAGATGATCATTTATCAC
caatcgtccttgatcatgttttagacaagttcttactttattgttttgtgggcagGGTCTTTCCTTTCAATCTCCAAACAGTGGAACTCAGATGATCATTTATCACTACAGTTCCCTATTACACTAAGGACTGAAGCAATAAAAG
ttcttac putative branch site (score: 25)
ttgtttt putative PPT
ttactttattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatcttttgagtgcatgaacaaaaaaatatatccatttcaatcgtccttgatcatgttttagacaagttcttactttattgttttgtgggcagGGTCTTTCCTTTCAATCTCCAAACAGTGGAACTCAGATGATCATTTATCACTACAGTTCCCTATTACACTAAGGACTGAAGCAATAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA