1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gctagtcaatgatttgccttttgttttgctattcccttttgattacttatggagaattgttttgtctaagattctaacctacaattatttgtgagtgcagAAGAACAAATGGGAATTTTTTATGTTCCTGATCCTAGAAGTTTCTGCAATGATTATTACTGGTGTGACGGCCGTCATAA
species | Oryza sativa |
transcript | LOC_Os02g09130.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGAGCAATTTGACCATCACTGCCCTTGGGTGTCTAATTGCATTGGAAAG AAGAACAAATGGGAATTTTTTATGTTCCTGATCCTAGAAGTTTCTGCAATGEST: gi|58684098|gb|CK072785.1|CK072785
genomic: TTGAGCAATTTGACCATCACTGCCCTTGGGTGTCTAATTGCATTGGAAAGgtactaaatt ... gtgagtgcagAAGAACAAATGGGAATTTTTTATGTTCCTGATCCTAGAAGTTTCTGCAATG
EST: TTGAGCAATTTGACCATCACTGCCCTTGGGTGTCTAATTGCATTGGAAAG AAGAACAAATGGGAATTTTTTATGTTCCTGATCCTAGAAGTTTCTGCAATG
genomic: TTGAGCAATTTGACCATCACTGCCCTTGGGTGTCTAATTGCATTGGAAAGgtactaaatt ... gtgagtgcagAAGAACAAATGGGAATTTTTTATGTTCCTGATCCTAGAAGTTTCTGCAATG
cttatggagaattgttttgtctaagattctaacctacaattatttgtgagtgcagAAGAACAAATGGGAATTTTTTATGTTCCTGATCCTAGAAGTTTCTGCAATGATTATTACTGGTGTGACGGCCGTCATAA
ttctaac putative branch site (score: 8)
tacaattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctagtcaatgatttgccttttgttttgctattcccttttgattacttatggagaattgttttgtctaagattctaacctacaattatttgtgagtgcagAAGAACAAATGGGAATTTTTTATGTTCCTGATCCTAGAAGTTTCTGCAATGATTATTACTGGTGTGACGGCCGTCATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - tgccttt
- - - - - - - - - - - -ttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctaca